Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00956 ATGAAAACCATGTCAAAAGTTGGATGCTTCACTTTGTTTGCTTTCTTAGTGGCACTTCATGTCGAGTGCCGTTGTCTTCGCCCTAGTGTTTCTGATGGGGTTGACGCTGTTCAATCCCATGAGGCTTATTTGCAACTCATAGACCAAAAGATTGAATCTTCTTCTGATGGGCATTACTGTAAGCAAATGTACGGATTCTTGCCTTGTTCCAGTAACATACTTGGCCATCTTTTCCTCATTTTGGTTTATGAGTATTTGTTGTTCCATGGAGAGTCATATTTGGCTACTGGAGGTGAAAAAATCTTCAAGATTCTTGGCCCTGGTGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGGGCACTTCCTGAGTCCTTAATTCTTGTTGTTACTGGACTTTCCAGTGACAAGGAGAGTGCACAAGAGTATGCTTCCACTGGTGTCGGTTTGTTGGCGGGATCATCCATCTTCCTTCTAACTGTAGTGTGGGGAACATGTGTTATCATTGGCAAGCAAGAGTTCATAAATGACTCTAACTCGAATGACTTACATTCATCGAGTACAGGAATAAAAAAATCACTAACTGGTTACGGTATCACTATGGATGAAGACACTAGAGAGATGGCAATAATCATGGTTTTCTCAATTATACCACTTATCATAATGCAGATTCCCCGTTTCTTCCACTTCTCTTCTGCAGCACGCTATGTGACTTTGATGGTTTCTCTTATAGTAGCTGTTACTTTTCTTATCTCATACTTCATTTACCAGGTCTTTAAACCTCAGATAGAGAAAACTAGACTGGAGTATATTAAGCATGATGACTTAATATTAAGAATTTTTGAACGTGTTGAGAAACAAACACTGCAAAAGATCCTGTCCGAGGATGGAACTCCCAATGTGGCTGCAATAAGTGGGTTGTATCATGAAATTAGTCAGCATGGGGGCAATGACTTGTTAGCTTCTGAAGTGAGAGAACTCTTGTTTGGGAACAAAATGACGGACACAAATATCAAAGAAGAACAGATAGCAGATTTGTTAAAAGCTTTTGACAGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGTTTAACAGAATACATTAACCAAACAAAGCATGCCTTGGATAGACAATACCTTCCAAAAGAATCTTTGAGCAATATGTATAAGACTTTTATTAAGCCATGGATTGAACACGTGAGAAAGGAACGTGAATTGAAGAAACATCTTATATCTGAAGTCTTAAAGCATGCTCAGAATGATATGGTTGGCAGGCTGCAAAATGATGATGGTACACCTGACAAAGCTGCAATCAAAAGGTTGTTTGAGGAAATTGATGTCAACAAGGATAACCACATTTCAAGATCTGAATTGGAAAAAGTAGTCAAGGACATCCAGTTTAACAAGTTTGTAGATGCTGAGGACGCAGTTACAAAACTTGTTCAAGATCTTGATCTCAACGGAGACGATGAAATTAGTAAGACCGAGTTCATTGAAGGTTTTACAAAATGGATGAACTCAAATTCCAGCCGAGCTGCTAACTCAAAATCTTCATCTCATGGAATTCATAAAACCTGGGAAGATGTTGAAAAGGTAATGGAAGAGAATCAAACCAATGGGGCTTCTGCATGGTTGACGGCCATAGGATATGTGGTATTGGGGGTTACTATGCTGTCTCTTCTTGCAGAACCCTTAATAGCAAGTGTTCAAAAATTCTCTGAAGAAGCAGGAATTTCATCATTTTTCATCTCATTCATTTTGGTTCCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGAGAAGTAATACTTCTCAGACAATATACGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATTTCTATTCTCATATACGTGCGTGAGATCAGTTGGCAATTCTCAGCTGATGTACTGGTTGTGGCAATAGTTTGTGCAGTAATGGGCCTCACTGCTTGTTTTCGCCCCACTTTTCCTCTTTGGACGTCCTTCGCTGCATACTTCATGTACCTAATAGCATTGCTCTTGGTTTTTGTCCTCAAAGATGTTCTCAATTATGTTTAA 2109 0.3926 MKTMSKVGCFTLFAFLVALHVECRCLRPSVSDGVDAVQSHEAYLQLIDQKIESSSDGHYCKQMYGFLPCSSNILGHLFLILVYEYLLFHGESYLATGGEKIFKILGPGVFGASAFDILGALPESLILVVTGLSSDKESAQEYASTGVGLLAGSSIFLLTVVWGTCVIIGKQEFINDSNSNDLHSSSTGIKKSLTGYGITMDEDTREMAIIMVFSIIPLIIMQIPRFFHFSSAARYVTLMVSLIVAVTFLISYFIYQVFKPQIEKTRLEYIKHDDLILRIFERVEKQTLQKILSEDGTPNVAAISGLYHEISQHGGNDLLASEVRELLFGNKMTDTNIKEEQIADLLKAFDRNGDQIITKEEFVTGLTEYINQTKHALDRQYLPKESLSNMYKTFIKPWIEHVRKERELKKHLISEVLKHAQNDMVGRLQNDDGTPDKAAIKRLFEEIDVNKDNHISRSELEKVVKDIQFNKFVDAEDAVTKLVQDLDLNGDDEISKTEFIEGFTKWMNSNSSRAANSKSSSHGIHKTWEDVEKVMEENQTNGASAWLTAIGYVVLGVTMLSLLAEPLIASVQKFSEEAGISSFFISFILVPLATNFREATSAIKEASHKKRSNTSQTIYEIYGAVFMNNILGFVVISILIYVREISWQFSADVLVVAIVCAVMGLTACFRPTFPLWTSFAAYFMYLIALLLVFVLKDVLNYV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00956 702 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
Phac5g00956 702 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Phac5g00956 702 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Phac5g00956 702 SUPERFAMILY EF-hand 326 508 IPR011992 -
Phac5g00956 702 Pfam EF-hand domain pair 438 502 IPR002048 GO:0005509
Phac5g00956 702 CDD EFh 440 504 IPR002048 GO:0005509
Phac5g00956 702 Gene3D - 297 378 - -
Phac5g00956 702 FunFam Sodium/calcium exchanger NCL 378 518 - -
Phac5g00956 702 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 62 695 IPR004713 GO:0006812|GO:0008324|GO:0016020
Phac5g00956 702 Gene3D - 379 518 - -
Phac5g00956 702 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Phac5g00956 702 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Phac5g00956 702 SMART efh_1 439 467 IPR002048 GO:0005509
Phac5g00956 702 SMART efh_1 341 369 IPR002048 GO:0005509
Phac5g00956 702 SMART efh_1 478 506 IPR002048 GO:0005509
Phac5g00956 702 Pfam Sodium/calcium exchanger protein 550 693 IPR004837 GO:0016020|GO:0055085
Phac5g00956 702 Pfam Sodium/calcium exchanger protein 93 258 IPR004837 GO:0016020|GO:0055085
Phac5g00956 702 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00956 Phac-Chr5 10884993 10889238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00956 390 695 EF-hand Containing Proteins AT1G53210 38.769 8.94e-62 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00956 - - gmx:100799062 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g00956 5 10884993 10889238 Phac5g00956 5 10884993 10889238 ECH