Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00951 ATGCCTGCCTCTCTCACTTCCCACCGGTCCATCTTCCTCATCCTTTGGATCGTGATCCTGTGCGGTCACGCTCATGCTCGCTTCTTCTCCCGCGATCCGCTCTCTGACGGCGTCTCCACCAACAGCTGGGAGGGCCTCCTCCGCCTCCCCTCGGCAATCACGGCTGAGTCCTCCTGCGAGCAGACCTACGGCTTCCTACCGTGCACCACCACCGTCTTCGGTAACCTGTTCCTCATCCTCATCTATGGTTTCCTCATGTTCAAGGCCGCCACGTTCCTCTCCGGCGGCAGCGAGCTCCTGCTCGAGATCTTGGGCCCCGGCATTGTTGGCGGCCTCTTCCTCCCCATCCTCGGTGCACTTCCCGATGCCATGCTCATCCTCGTGTCTGGGCTTTCAGGTAGTAAAGAAACTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGGTCCACGGTGCTGCTTCTTACTATAATATGGGGGACCTGTGTAATTGTTGGCAAGTGTGACATCGAGGATTCAATTGCTATAGATTCACAAGACACTAGGGGATTTAGTTTAACTGGTTCTGGTGTTAGTACTGATATCTGGACAAGTTATTCAGCACGGATTATGGTTATATCTGTCCTTCCATTTGTGATCGTTCAATTACCACAAATTCTTAATTCAACATCAGGAAGGCACTTGGCTGTTTTGATAGCTCTCATTGTGTCACTCGGTTTATTGGTTGCTTATTGTCTTTACCAGATTTTCCAGCCCTGGATACAAAGGAGGAAACTTGAATATATTAAACACAAGCATGTTATACTAGGATTTTTGACACATTTGAAGAAACGTGCGTTGGGAAGGCTGCTGAATGATAACGGTGAACCTGATAAAGAAGTCATTAGAAAATTGTTTACAACCATTGATGAAAATCAAGATGGCAGTCTTACTCATAATGAATTGAGAGCACTGGTTATTGGAATTCAGTTTGAGGAGATTGACCTGGATCATGATGATGCCGTAAAAAGGATCATGAATGATTTTGACACGTCTGGCAATGCACTTGTTGATGAAGAAGAATTTGTTAATGGTGTGTGTAGATGGCTTCAAAGGGCCCAGCGTGCTCGAGTTGCATCTGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGTGATTTTCACACAGAAACAAAAAGGGAACATGATTTGCTGGACGTGGGAGATCAGAGTAATGAAGAGGCCGAGGGCATTGAGAATTCTAAATGGATATCCATCAAAGCAGTTCTGTTTCTGCTACTGGGTAGTATTATTGCTGCTGCATTTGCTGATCCTCTAGTTGATGCAGTGGATAACTTTTCTGAGGCTACAAGTATTCCTGCTTTCTTCATTTCCTTCATTGCTCTGCCTTTAGCCACCAATTCAAGTGAAGCAGTGTCAGCAATAATTTTTGCTAGTCGTGATAAGAGGCAAACTGCCTCATTAACTTTTTCTGAGATATATGGTGCAGTGACAATGAATAATGTGCTTTGTCTATCAGTCTTCTTGGCCTTGGTTTATGCGAGGGGATTGACATGGGACTTCTCTTCAGAAGTGTTGGTTATTTTGGTCGTTTGCATTTTGTTGGGTGTCTTTGCCAGCTTCCGCACTGTCTTCCCTCTATGGACATCTATACTGGCTATCCTACTTTACCCCTTCTCCCTGGCATTGGTGTATGTTCTTGATTATGTATTTGGTTGGTCGTAG 1731 0.4558 MPASLTSHRSIFLILWIVILCGHAHARFFSRDPLSDGVSTNSWEGLLRLPSAITAESSCEQTYGFLPCTTTVFGNLFLILIYGFLMFKAATFLSGGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIAIDSQDTRGFSLTGSGVSTDIWTSYSARIMVISVLPFVIVQLPQILNSTSGRHLAVLIALIVSLGLLVAYCLYQIFQPWIQRRKLEYIKHKHVILGFLTHLKKRALGRLLNDNGEPDKEVIRKLFTTIDENQDGSLTHNELRALVIGIQFEEIDLDHDDAVKRIMNDFDTSGNALVDEEEFVNGVCRWLQRAQRARVASGDAGPHTMKFLSDFHTETKREHDLLDVGDQSNEEAEGIENSKWISIKAVLFLLLGSIIAAAFADPLVDAVDNFSEATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVILVVCILLGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00951 576 ProSiteProfiles EF-hand calcium-binding domain profile. 292 327 IPR002048 GO:0005509
Phac5g00951 576 FunFam Sodium/calcium exchanger family protein / calcium-binding EF hand family protein 269 391 - -
Phac5g00951 576 Gene3D - 274 389 - -
Phac5g00951 576 CDD EFh 297 361 IPR002048 GO:0005509
Phac5g00951 576 ProSitePatterns EF-hand calcium-binding domain. 305 317 IPR018247 -
Phac5g00951 576 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Phac5g00951 576 FunFam Sodium/calcium exchanger NCL2 412 569 - -
Phac5g00951 576 Pfam Sodium/calcium exchanger protein 423 567 IPR004837 GO:0016020|GO:0055085
Phac5g00951 576 Pfam Sodium/calcium exchanger protein 76 253 IPR004837 GO:0016020|GO:0055085
Phac5g00951 576 SUPERFAMILY EF-hand 291 365 IPR011992 -
Phac5g00951 576 SMART efh_1 296 324 IPR002048 GO:0005509
Phac5g00951 576 SMART efh_1 336 364 IPR002048 GO:0005509
Phac5g00951 576 Gene3D - 412 570 IPR044880 -
Phac5g00951 576 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 62 568 IPR004713 GO:0006812|GO:0008324|GO:0016020
Phac5g00951 576 Pfam EF-hand domain pair 295 359 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00951 Phac-Chr5 10789345 10795490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00951 24 576 EF-hand Containing Proteins AT1G53210 67.018 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00951 - - gmx:100809896 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g00951 5 10789345 10795490 Phac5g00951 5 10789345 10795490 ECH