Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04481 ATGGCCTTCTCTGCTGCTGCTACCTTTCTTAAGCCAAACTATTCTTTCTCCCCATCCCACAAACCCAACTATCACTGCAGAAACAAGTTCTGCGTCAGAGTTTCAGCAAGTGACTCGGCTGACGTGGAGAAGACTATCATCAGGAAAGAGAAAGACGGGTGGAAGATCAATTACTCAGGAGAGAAACCACAGACACCATTGTTGGACACAGTCAACCACCCAATTCACATGAAGAATCTCTCCACACAGGATCTCGAGCAACTTGCAGCAGAGCTGAGGGCAGATATTGTACACAGTGTTTCAAACACTGGTGGGCATCTTAGCTCAAGCTTGGGAGTGGTGGAGTTATCAGTGGCTTTGCATCATGTTTTCGACACCCCTGAAGACAAAATTATATGGGATGTTGGTCATCAGGCATACCCACACAAGATTCTCACAGGTAGAAGATCCAGAATGCACACCATTAGGAAGACTTCGGGGCTAGCAGGTTTTCCTAAAAGGGATGAGAGTGTTCATGATGCTTTTGGGGTTGGACACAGTTCTACAAGCATATCTGCTGGTCTTGGCATGGCTGTTGCACGTGATCTACTGGGGAAGAAGAACAGCATCATATCAGTGATAGGAGATGGGGCATTGACAGCAGGCCAAGCTTATGAGGCCATGAACAATGCAGGGTTCCTTGATTCTAACATGATAGTAATACTTAATGACAACAAGCAAGTCTCTTTACCAACTGCAACACTTGATGGCCCTGCAACTCCTGTTGGAGCCCTCAGCAGTACTTTGAGCAAAATTCAAGCGAGTACAGAATTCCGCCAACTTAGAGAAGCTGCAAAAAGCATCACGAAACAAATAGGAGGACAAACACACCAGGTTGCAGCCAAAGTGGATGAGTATGCAAGAGGCATGATCAGCGGTTCTGGATCTACATTATTTGAAGAACTTGGCTTGTACTACATAGGTCCTGTGGATGGTCATAACATTGAAGATCTAGTCACCATCTTTCAAAAAGTCAAAGCAATTCCTGCTCCAGGTCCGGTTTTGATTCATATTGTGACAGAAAAAGGAAAGGGATACCCCCCAGCAGAAAAAGCAGCTGATAGAATGCACGGGGTTGTAAAGTTTGATCCAAAAACAGGCCAGCAATTCAAGACAAAATCCCCAACACTTTCATACACACAGTACTTTGCTGAGTCTCTGATAAAGGAAGCTGAAGTAGACAACAAGATAGTGGGCATTCACGCAGCAATGGGTGGTGGTACCGGCTTAAATTATTTCCACAAAAGGTTTCCCGATCGCTGTTTCGATGTGGGCATAGCCGAACAACATGCTGTTACATTTGCTGCTGGTTTAGCTGCTGAAGGCCTCAAGCCCTTTTGTGCCATTTATTCATCATTCCTCCAACGTGGATATGATCAGGTAGTCCATGATGTTGATCTTCAAAAGCTACCTGTCCGATTTGCTCTGGATAGAGCTGGTTTGGTTGGAGCAGATGGACCAACCCACTGTGGAGCATTTGACATCACTTACATGGCTTGCCTCCCCAACATGGTGGTCATGGCTCCTTCTGATGAAGCTGAACTGATGCACATGGTTGCAACAGCAGCAACTATAGATGACAGACCAAGCTGCTTCAGATTTCCAAGGGGAAATGGAATTGGAGCCACTTTGCCACTGAATAACAAAGGAACCCCACTTGAGATAGGAAAAGGCAGAATTCTGATGGAGGGCAGCAGAGTTGCTATTTTGGGATATGGTTCTGTAGTCCAACAATGCAGACATGCCTCAGAATTGGTTAAAGAAGAAGTAGGCGTTAATGTGACAGTTGCTGATGCCAGGTTTTGCAAACCTTTGGATACTGATCTCATCAGGCTACTAGCTAAAGAGCATGAAATACTGATCACAGTGGAAGAGGGGTCTATTGGTGGTTTTGGATCACATGTTTCTCAATTCTTGAGCTTATCTGGTATCCTAGATGGACCTCTAAAGTGGAGAGCAATGATGCTTCCTGATAGGTACATTGATCATGGATCACCTCAGGATCAGGTTGAAGAAGCAGGGCTTTCATCAAAACACATTGCAGCCACAGTTCTGTCTCTTCTTAAAAGGCCAAAAGAAGCTCTTCTGTTCAAATAG 2136 0.4508 MAFSAAATFLKPNYSFSPSHKPNYHCRNKFCVRVSASDSADVEKTIIRKEKDGWKINYSGEKPQTPLLDTVNHPIHMKNLSTQDLEQLAAELRADIVHSVSNTGGHLSSSLGVVELSVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGVGHSSTSISAGLGMAVARDLLGKKNSIISVIGDGALTAGQAYEAMNNAGFLDSNMIVILNDNKQVSLPTATLDGPATPVGALSSTLSKIQASTEFRQLREAAKSITKQIGGQTHQVAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIEDLVTIFQKVKAIPAPGPVLIHIVTEKGKGYPPAEKAADRMHGVVKFDPKTGQQFKTKSPTLSYTQYFAESLIKEAEVDNKIVGIHAAMGGGTGLNYFHKRFPDRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAATIDDRPSCFRFPRGNGIGATLPLNNKGTPLEIGKGRILMEGSRVAILGYGSVVQQCRHASELVKEEVGVNVTVADARFCKPLDTDLIRLLAKEHEILITVEEGSIGGFGSHVSQFLSLSGILDGPLKWRAMMLPDRYIDHGSPQDQVEEAGLSSKHIAATVLSLLKRPKEALLFK* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04481 711 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 67 702 IPR005477 GO:0008661|GO:0016114
Phac3g04481 711 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 68 353 IPR005477 GO:0008661|GO:0016114
Phac3g04481 711 Pfam Transketolase, C-terminal domain 569 693 IPR033248 -
Phac3g04481 711 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 389 557 - -
Phac3g04481 711 CDD TPP_PYR_DXS_TK_like 396 549 - -
Phac3g04481 711 SUPERFAMILY TK C-terminal domain-like 564 702 IPR009014 GO:0003824
Phac3g04481 711 CDD TPP_DXS 104 359 IPR005477 GO:0008661|GO:0016114
Phac3g04481 711 SMART Transket_pyr_3 390 555 IPR005475 -
Phac3g04481 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 368 551 IPR029061 -
Phac3g04481 711 Gene3D - 569 702 IPR009014 GO:0003824
Phac3g04481 711 Gene3D - 60 362 - -
Phac3g04481 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 26 708 IPR005477 GO:0008661|GO:0016114
Phac3g04481 711 Pfam Transketolase, pyrimidine binding domain 390 551 IPR005475 -
Phac3g04481 711 ProSitePatterns Transketolase signature 1. 93 112 IPR005474 -
Phac3g04481 711 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 569 702 - -
Phac3g04481 711 ProSitePatterns Transketolase signature 2. 496 512 IPR020826 -
Phac3g04481 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 65 421 IPR029061 -
Phac3g04481 711 Gene3D - 390 557 - -
Phac3g04481 711 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 70 701 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04481 Phac-Chr3 42887925 42912058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04481 370 649 Acyl Lipid Metabolism Gene Families AT1G55510 21.993 3.24e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04481 K01662 - gmx:100798930 1295.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g04481 3 42887925 42912058 Phac3g04481 3 42887925 42912058 ECH