Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04228 ATGTACGGTCCCCGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCAAATCCATACTTCGCAGTGAGCAGCGGGACAGGCAGCTTACCTTATGGATATGCTGGTGGCTTTCAGCCCCCTCCCTTTCCTGTGGTTCGTCTCAGGGGGCTTCCATTCAACTGTACCGACATTGACATCTTGAAGTTTTTTGCTGGACTGACCATTGTCGATGTGTTGCTGGTGAATAAGAGTGGACGGTTCTCGGGAGAGGCCTTCGTGGTCTTTGCAGGAGCAATGCAGGTTGAGTTTGCTTTACAGAGAGATCGCCAGAACATGGGTCGCCGGTATGTGGAAGTGTTCAGGTGTAAGAAGCAGGATTATTATAATGCTGTTGCTGCTGAGATCAATTACGAAGGAATATATGATAATGATTACCATGGTAGTAGTCCTCCACCCTCCCGGTCAAAGAGGTTCAGTGATAAAGATCAAATGGAGTACACTGAGATATTGAAGATGCGTGGCCTTCCCTTCCAAGTGACAAAATCTCAAATTGTTGAATTCTTTAAAGATTTCAACCTGATAGAAGACAGGGTACACATTGCATGTCGCCCTGATGGGAAAGCTACAGGAGAGGCATACGTGGAGTTTGTTTCTGCTGAGGAGGCTAAGAGGGCAATGTCCAAGGATAAAATGACCATAGGATCAAGGTACGTGGAGCTGTTCCCTTCTACTCCAGATGAAGCTAGACGGGCAGAGTCAAGATCAAGGCAGTGA 795 0.4792 MYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTGSLPYGYAGGFQPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAAEINYEGIYDNDYHGSSPPPSRSKRFSDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFNLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEARRAESRSRQ* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04228 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 122 IPR000504 GO:0003723
Phac3g04228 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 245 IPR000504 GO:0003723
Phac3g04228 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 176 248 - -
Phac3g04228 264 SUPERFAMILY RNA-binding domain, RBD 174 261 IPR035979 GO:0003676
Phac3g04228 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 252 IPR000504 GO:0003723
Phac3g04228 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 58 127 - -
Phac3g04228 264 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 52 256 - -
Phac3g04228 264 SUPERFAMILY RNA-binding domain, RBD 49 136 IPR035979 GO:0003676
Phac3g04228 264 SMART rrm1_1 58 127 IPR000504 GO:0003723
Phac3g04228 264 SMART rrm1_1 176 248 IPR000504 GO:0003723
Phac3g04228 264 Gene3D - 159 264 IPR012677 -
Phac3g04228 264 Gene3D - 56 140 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04228 Phac-Chr3 41010754 41012862 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04228 K12898 - gmx:100816391 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g04228 3 41010754 41012862 Phac3g04228 3 41010754 41012862 ECH