LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g03534	ATGGCTCTAACCCTTCGTTCTTCAATTTCTTTTATTAATCAGAAGGAAACCAAAATCCTTAAAACTTCTGATGATGTCCCTGCGATACTTAGTTTTGCAAAGCTTAAACCATCGTTTCGTCTCCGAGTGAAAAATTCCATGCAAGAAGCACACCACGCTCGCGACAACAGCTTCAACTCTGAAGCAAGGAGAAACGAAAAATGGGAGAAGGTGCATGCTCCTTCGGTGGCTCATAGTCACAGTGGTTCGAAGAGAGTACCTGTGTATGTGATGCTGCCACTAGACACTGTAACAATGGGAGGAAGCTTGAATAAACCCAGAGCAATGAATGCAAGTTTGATGGCCCTGAAGAGTGCAGGAGTGGAAGGCGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAGGACGGGCCTTTGAAGTACAACTGGGAACCCTATGCTGAGCTTGTGCAGATGGTACAAATGCATGGTTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGGGGAAATGTTGGAGACACTTGCAGCATTCCTCTACCACCATGGGTGCAGGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCCTAGGCTGTGATTCAGTTCCTATTCTAAGAGGAAGGACTCCCCTCCAAGTGTACGCCGACTACATGAGAAGCTTTCGTGACAGATTCCAAGATTACTTAGGCAGTGTTATCGTGGAAATACAAGTTGGCATGGGTCCATGTGGAGAACTGAGATATCCGTCATATCCAGAAACAAATGGAACTTGGAGGTTTCCCGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCCTCCTTGGCAGCAGCAGCCGAGGCCATTGGAAAGAAAGAATGGGGAGGAGGTGGACCCCATGACTCTGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGGGAAGGGACATGGAACACTGAATATGGACGGTTCTTTCTAGAGTGGTACTCTGGCAAATTGCTAGAACATGGTGAGAAGATTCTGGTATCAGCCCAAGGAATATTCCATACATCAGGGGTCAAACTATCAGGGAAAGTTGCTGGAATCCATTGGCACTACAGAGCAAGGTCACACGCAGCTGAACTAACTGCTGGCTACTATAACACGCGGAATAACGATGGGTATATGCCCATAGCCAGAATGCTGGCAAAACATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAGCAGCCTGACTTTGCTAACTGCTCACCTGAAGGGTTGGTTCGGCAGGTGAAGATGGCAACAACAACAGCTAGAGCACAACTTGCTGGAGAAAACGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTGTCAACAAGTAAATCCGAATCTAGCAACGGATTGGCAGCATTCACTTATCTAAGAATGAACAAGAGGTTGTTTGAAGGTGATAATTGGCGGCACCTAGTGGATTTTGTAAGAAGCATGTCTGAAGGTGGTAGGACCGAGAGACTTCCGGCATCTGATTCCCATGGGAGTGATCTTTATGTTGGGCACATCAAATCAACACAGGAGAAGCACACAAAAGAGGCTGTTCTTGTGTAA	1647	0.4578	MALTLRSSISFINQKETKILKTSDDVPAILSFAKLKPSFRLRVKNSMQEAHHARDNSFNSEARRNEKWEKVHAPSVAHSHSGSKRVPVYVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEPYAELVQMVQMHGLKLQVVMSFHQCGGNVGDTCSIPLPPWVQEEISKNPDLVYTDRSGRRNPEYISLGCDSVPILRGRTPLQVYADYMRSFRDRFQDYLGSVIVEIQVGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGGGGPHDSGQYNQFPEDTGFFKREGTWNTEYGRFFLEWYSGKLLEHGEKILVSAQGIFHTSGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRNNDGYMPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVRQVKMATTTARAQLAGENALERYDADAYAQVLSTSKSESSNGLAAFTYLRMNKRLFEGDNWRHLVDFVRSMSEGGRTERLPASDSHGSDLYVGHIKSTQEKHTKEAVLV*	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g03534	548	Gene3D	Glycosidases	78	546	-	-
	Phac3g03534	548	PRINTS	Plant beta-amylase signature	404	414	IPR001371	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Plant beta-amylase signature	486	500	IPR001371	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Plant beta-amylase signature	245	254	IPR001371	GO:0000272\|GO:0016161
	Phac3g03534	548	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	48	519	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	383	394	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	120	134	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	330	349	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	366	382	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	141	159	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	255	277	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	163	184	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	438	460	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	401	424	IPR001554	GO:0000272\|GO:0016161
	Phac3g03534	548	SUPERFAMILY	(Trans)glycosidases	82	513	IPR017853	-
	Phac3g03534	548	ProSitePatterns	Beta-amylase active site 1.	167	175	IPR018238	GO:0000272\|GO:0016161
	Phac3g03534	548	Pfam	Glycosyl hydrolase family 14	89	506	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g03534	Phac-Chr3	35625640	35630184	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g03534	1	548	Glycoside Hydrolase	AT4G17090	70.492	0.0	838

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g03534	K01177		-	gmx:100818063	1042.72

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phac3g03534	3	35625640	35630184	Phac3g03534	3	35625640	35630184	ECH