Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03193 ATGTATTGTGCAACCCAAAATTTTGATTGTAGGGATTTGGGGAAATGCCCCTTGTCGTGGGACCCTATTTCCAGGAACACACAAGTTTTGTGCTTGAATTTTGTTTTTGTGCTAGTAATGGCGAAAACATGCAAGTCGCAAGAAGAAATTGCGTGTGAAGCTATTAAACATGCTTTGAAGGCACTGCGGAAGCGCCATTTGCTTGAAGAAGCCGCTCATGGTCCCGCTGTTCTAGCTCTCTCTAGACCCATCGCTTCTCAGGGCTCTGAGTGGAAAGAGAAAGCAGAGAATCTTCAAGTGGAACTTCAGCAATGCTACAAAGCACAATCTAGACTGTCTGAGCAGCTTGTTGTGGAAGTAGCTGAGTCCAGAACTTCAAAAGCGTTGGTTCAAGAGAAAGAAAATGCAGTTGCTGATTTGCAAAAGGAATTGACTGAATTGAGGGATGAGTGTTCTCAGTTAAAGGAAGACTTGGAAGAAAAGATCAAATCTCTAGAAATGATTGTCAGTGAGAATTCTGAACTTAAAACCCAACTGCAGCAGATGACTACTAAAGCCAATAAAGCTGAAGCTGAAAATAAGATGTTGATCGACCGCTGGATGTTGGAAAAGATGAAGGATGCTGAACGCCTGAATGAGGCCAACGCACTGTATGAAGACATGGTCGAGAAACTAAAGGCCAGTGGCTTAGAGCAACTTGCAAGGCAGCAGGTGGATGGTATAGTTCGCCAAAGTGAAGAAGGTGCTGAATTTTTTTTAGAGTCAAGCATCCCTTCCACATGTAAATACAGGCTTCGTGCACATGAAGGTGGTTGTGCTTCCATGTTGTTTGAGTACAATTCCAGTAAACTGATCACTGGGGGACAGGATCGGTTAGTTAAAATGTGGGATACAAATACAGGATCCTTATCTTCTACTCTTCATGGCTGCCTTGGCTCAGTATTAGATCTCACGATCACCCATGATAATCGATCTGTCATTGCTGCAAGCAGCTCAAACAACTTGTATGTATGGGATGTCAACTCCGGCCGTGTCCGTCATACCCTTACTGGCCACACAGATAAAGTTTGTGCTGTTGATGTGAGCAAGATTTCAAGTCGTCATGTTGTCAGTGCTGCTTATGATCGTACCATAAAAGTTTGGGACCTAGTGAAAGGTTACTGCACTAACACAATCATTTTTCCCAGCAACTGCAATGCTCTCTCCTTCAGCATGGATGGTCAGACCATATTTTCAGGACATGTTGATGGCAATCTTCGGTTATGGGACATTCAAAGCGGAAAGCTACTCAGCGAGGTTGCTGCACATTCGCTTGCGGTCACATCAATATCCCTTTCTCGAAATGGAAATATTGTACTGACCAGTGGAAGGGACAACTTGCACAATTTGTTTGACGTGCGATCTCTTGAAGTTTGTGGCACACTAAAAGCGACGGGAAACAGAGTTGCTTCTAACTGGAGCCGCTCCTGTATTAGTCCAGATGACAATCACGTTGCTGCTGGGTATGCCGATGGATCTGTCTATATTTGGTCCATTTCTAAAGGTGATATAGTCGGTACACTCAAGGAACACACTTCTTCTGTTCTGGGTTGTACGTGGAGCGGGGTTGGAAAACCGCTGGCTTCAGCTGACAAGAATGGGATAGTTTGTGTCTGGACATAA 1662 0.4428 MYCATQNFDCRDLGKCPLSWDPISRNTQVLCLNFVFVLVMAKTCKSQEEIACEAIKHALKALRKRHLLEEAAHGPAVLALSRPIASQGSEWKEKAENLQVELQQCYKAQSRLSEQLVVEVAESRTSKALVQEKENAVADLQKELTELRDECSQLKEDLEEKIKSLEMIVSENSELKTQLQQMTTKANKAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVEKLKASGLEQLARQQVDGIVRQSEEGAEFFLESSIPSTCKYRLRAHEGGCASMLFEYNSSKLITGGQDRLVKMWDTNTGSLSSTLHGCLGSVLDLTITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTIKVWDLVKGYCTNTIIFPSNCNALSFSMDGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSLAVTSISLSRNGNIVLTSGRDNLHNLFDVRSLEVCGTLKATGNRVASNWSRSCISPDDNHVAAGYADGSVYIWSISKGDIVGTLKEHTSSVLGCTWSGVGKPLASADKNGIVCVWT* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 433 468 IPR001680 GO:0005515
Phac3g03193 553 Gene3D - 128 201 - -
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Phac3g03193 553 Gene3D - 394 484 IPR015943 GO:0005515
Phac3g03193 553 Gene3D - 485 553 IPR015943 GO:0005515
Phac3g03193 553 SUPERFAMILY WD40 repeat-like 257 552 IPR036322 GO:0005515
Phac3g03193 553 ProSitePatterns Trp-Asp (WD) repeats signature. 369 383 IPR019775 -
Phac3g03193 553 ProSitePatterns Trp-Asp (WD) repeats signature. 410 424 IPR019775 -
Phac3g03193 553 Coils Coil 208 228 - -
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Phac3g03193 553 CDD Atg16_CCD 125 215 - -
Phac3g03193 553 FunFam Autophagy-related protein 16 isoform A 128 201 - -
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 432 IPR001680 GO:0005515
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 520 IPR001680 GO:0005515
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 553 - -
Phac3g03193 553 Pfam Autophagy protein 16 (ATG16) 87 212 IPR013923 -
Phac3g03193 553 Gene3D - 253 393 IPR015943 GO:0005515
Phac3g03193 553 CDD WD40 261 552 - -
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 553 IPR001680 GO:0005515
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 302 - -
Phac3g03193 553 PANTHER AUTOPHAGY PROTEIN 16-LIKE 48 524 IPR045160 GO:0000045
Phac3g03193 553 Coils Coil 123 199 - -
Phac3g03193 553 Pfam WD domain, G-beta repeat 345 382 IPR001680 GO:0005515
Phac3g03193 553 Pfam WD domain, G-beta repeat 261 297 IPR001680 GO:0005515
Phac3g03193 553 Pfam WD domain, G-beta repeat 398 423 IPR001680 GO:0005515
Phac3g03193 553 Pfam WD domain, G-beta repeat 490 511 IPR001680 GO:0005515
Phac3g03193 553 FunFam Autophagy-related protein 16 isoform A 396 553 - -
Phac3g03193 553 PRINTS G protein beta WD-40 repeat signature 284 298 IPR020472 -
Phac3g03193 553 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Phac3g03193 553 PRINTS G protein beta WD-40 repeat signature 410 424 IPR020472 -
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 383 - -
Phac3g03193 553 FunFam Autophagy-related protein 16 isoform A 253 395 - -
Phac3g03193 553 SMART WD40_4 258 297 IPR001680 GO:0005515
Phac3g03193 553 SMART WD40_4 385 423 IPR001680 GO:0005515
Phac3g03193 553 SMART WD40_4 342 382 IPR001680 GO:0005515
Phac3g03193 553 SMART WD40_4 468 511 IPR001680 GO:0005515
Phac3g03193 553 SMART WD40_4 426 465 IPR001680 GO:0005515
Phac3g03193 553 SMART WD40_4 300 339 IPR001680 GO:0005515
Phac3g03193 553 SMART WD40_4 514 553 IPR001680 GO:0005515
Phac3g03193 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 391 IPR001680 GO:0005515
Phac3g03193 553 ProSitePatterns Trp-Asp (WD) repeats signature. 284 298 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03193 Phac-Chr3 32704351 32708057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03193 323 538 Miscellaneous Gene Families AT5G08390 23.502 3.56e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03193 K17890 - gmx:100778336 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g03193 3 32704351 32708057 Phac3g03193 3 32704351 32708057 ECH