Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03170 ATGAACCGTTTGAAGGCAATTGTTGCTAGCCTCAGATCCCTCGACTCGCCACTCGCCAGGAGACTCATTGCAACTCGGTCCATCCAACTCACTCAGAATCAGGTGACTCATTTCTCTCTTTACACTCCATCTCCCCTTTTGGATCATTCTCACAATTTTCCCTTTCCCAACATTCATCGGAAGCTCTACTTTTCTTCGAAACCAAATCCCATTCCCGAGCTTATTTTTACCAGCCATTGGTCCAAGGGGTTAGAGCATGAGCTAGAAAAATGCTACCCATCCCTGACCCATGAAACTGTTGTTTACACTTTGAAGCGATTGGAAGCAAACCCAGAAAAAGCATGGTGCTTTTTCGATTGGGTCAGTACGAAAAATTGGTTTAGAGCAAGTTCTACAATATATGGCTTAATTCTTAGGGTCTTGGCCACTGAGGAAACGATAAAACAGTTTTGGATTACTCTATGGACTATGAAGAGAAAGGGGTTTTATTTTTACGAAGAAATGTATTTTCCAATTTTAGCCGGTTTTAAAAGGAAAAAGATGGACAAGGATCGGTCGTCTCTTATCCACTTCTATAATCGGAGTATCCGGGAAGATGCAATGCAAAGTGTTGTTGCCAATGTGGTTGACATCATTTCAGTGTCTAAATGGGGTGATGGTGTTAAGGGTGAACTTGCAAAGGTTAAAATTCAGCTCTCGGATAATTTTATAATAAGGGTTTTGAGAGAGCTTCGAAACACTCCTTTAAAGGCTTACGAGTTCTTTCGTTGGGTTGGGAGACAATCTGGTTATGAGCATAATACAATAACTTATAATGCATTTGCAAGAGTTCTGGCGAGGACAGATTCAATTGAGAAGTTTTGGAGTGTCATCGAGGAGATGAAGAGTGTGGATCATGAATTGGATATTGATACTTACCTAAAGATATCAAGGATGCTTCAAAGGAATAGGATGATGGAAGATGCTGTCAAGCTTTATGAGCTTATGATGGATAGTTCATATAAGCCATCAGTTGAGGATTGCTGCTTTCTTTTGAATAGTATCTCTGAAAGTGATAAGCCAAATTTGGATTTAGTTTTCAGGGTTTCTAAGAAATACGAGTCAACAGGGCACACTCTCTCCAAGGCAATCTATGATGGGATCCACAGGTCTTTGACAAGTTCTGGGAAACTTGACGAAGCTGAGAATATTGTTAATCGTATGAGAAATGCTGGTCATGAACCTGATAACATCACATATGGTCAAATGATTGTTGGATTTTGTAAGATGAGGAGGCTTGAAGAAGCATGTAAAGTGCTGGAGGACATGGAATCTTGTGGTTGCATCCCTGATACCAAGACTTGGACCCTGTTGGTCCAAGGGTATTGTGTTGCGAATGAAGTAGACAAGGCATTACTATGTTTACATAAGATGCTTGAAAAGGGATGCAATCTGGATGCTACTGTTTTAAGTGTTCTAACAGACAGTTTTCTTGGTCAGAAGCGAATAGATGATGCATACAAGTTGCTTGTAAAGGTTGTTACTAAACACGGTGCATCTCCGTCTCACAGTACATATAAGAAACTGATTGTAAATCTATTGGAAATTGAGAAATTTGAGGAGGCTCTCAACCTTCTTTGTTTGACTAGGAAACACAAATGCACACCAATTCTTGAACCCTTTGTGCAGTATATTTCTAATTTTGGATCTGTTGAAGATGCTGTGAAATTCCTGAAGAGTAAGGGAAGTCCCCGGTCGTATTTGATCTACCTTCGTGTTTTTAAATCTTTACTTGGAAAAGGTAGACTCTCAGATGCCGAAGATCTGTTGAGCAAGATACCCTCCTATATAAGTAAACGCAAAGAAATCCGTGAATTCTTCAATTCAATGGAGAATTGCACGGTGCACAGCCTCGGCAATATAGCAGCCAGTAATGTCATTATTTAA 1926 0.4003 MNRLKAIVASLRSLDSPLARRLIATRSIQLTQNQVTHFSLYTPSPLLDHSHNFPFPNIHRKLYFSSKPNPIPELIFTSHWSKGLEHELEKCYPSLTHETVVYTLKRLEANPEKAWCFFDWVSTKNWFRASSTIYGLILRVLATEETIKQFWITLWTMKRKGFYFYEEMYFPILAGFKRKKMDKDRSSLIHFYNRSIREDAMQSVVANVVDIISVSKWGDGVKGELAKVKIQLSDNFIIRVLRELRNTPLKAYEFFRWVGRQSGYEHNTITYNAFARVLARTDSIEKFWSVIEEMKSVDHELDIDTYLKISRMLQRNRMMEDAVKLYELMMDSSYKPSVEDCCFLLNSISESDKPNLDLVFRVSKKYESTGHTLSKAIYDGIHRSLTSSGKLDEAENIVNRMRNAGHEPDNITYGQMIVGFCKMRRLEEACKVLEDMESCGCIPDTKTWTLLVQGYCVANEVDKALLCLHKMLEKGCNLDATVLSVLTDSFLGQKRIDDAYKLLVKVVTKHGASPSHSTYKKLIVNLLEIEKFEEALNLLCLTRKHKCTPILEPFVQYISNFGSVEDAVKFLKSKGSPRSYLIYLRVFKSLLGKGRLSDAEDLLSKIPSYISKRKEIREFFNSMENCTVHSLGNIAASNVII* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03170 641 Gene3D Tetratricopeptide repeat domain 231 386 IPR011990 GO:0005515
Phac3g03170 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Phac3g03170 641 NCBIfam pentatricopeptide repeat 411 445 IPR002885 -
Phac3g03170 641 NCBIfam pentatricopeptide repeat 269 302 IPR002885 -
Phac3g03170 641 NCBIfam pentatricopeptide repeat 313 337 IPR002885 -
Phac3g03170 641 NCBIfam pentatricopeptide repeat 447 479 IPR002885 -
Phac3g03170 641 Gene3D Tetratricopeptide repeat domain 387 511 IPR011990 GO:0005515
Phac3g03170 641 PANTHER OS01G0970900 PROTEIN 75 622 IPR044578 GO:0008380
Phac3g03170 641 Pfam PPR repeat 269 296 IPR002885 -
Phac3g03170 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Phac3g03170 641 Pfam Pentacotripeptide-repeat region of PRORP 317 490 IPR033443 -
Phac3g03170 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Phac3g03170 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03170 Phac-Chr3 32540908 32543787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03170 319 606 Glycosyltransferase AT1G05670 25.170 4.75e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03170 - - vum:124838645 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g03170 3 32540908 32543787 Phac3g03170 3 32540908 32543787 ECH