Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02801 ATGAAGCAACATGTGGTGACAGTGGCTAGCGGTCTCCTGAGTTTCTTGTTTAAGGGATTCGTGCGTTTGATAATGGCAATGCCGGAAACCATCCCTCTGACTACTCCCAGTGCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTCTGCACCAATCCCCAAACTTGGTGCACAGGTTTTATCAGGATTCGAGTTTCTTGACCAGATCAGACAACAATGGTGTGATGACAACTGTGACAAGTGTTCAAGAAATCCATGAGAAGATCATTTCACTGAAGTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCGCATAAGGGAGGTGTGATAGTGTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAAAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTTTGTTTTAAATGATGTCTTTAGGTACATTGAGGTGAATGATGCACCGCAGTTAAATTCTGCCTCAGGAAATGCCATCACTGAAAATACTGAGACAGTGCATGAGCCAGAATCAGAGGAGACACATTCTCCCAAACATCTTGTGGAAGACCCTGCAACTTCAACTTTGGTAGAGGATGAAAACCATAGTAATGGCGGTGAAGTTTATCATCCTCAGGATGAGGAAGAGGGATCAGTTATTGATGAAGAGGTCGCTGAACCCCCTACTGACTTAAGTCAGAATGATATTGTTACGGTGCATGATTCAATTTCTGCTGCTCAGGATGATGCACCAAAGAGATCATATGCATTCATTGTAATGAAAAGTAATGTAGCATCTGGCCATGTCTACGTTCCCAGACAAGCTGCAAGAGTGGCATCTGCTAAATCCAGTGAACAATGGCCTACTACTGCCAAATCAACCCCTGTGCCTGAGTCATTTGCTCCTATTAGTGACAGTGCACCTGGGAGTAGTGACCTCCATGAAGAAGCTGAAGGTCACTCCATATATATACGGAACTTGCCGTTTAGCGCAACAGTTGAGCAACTTGAAGAGGTTTTTAAGAAATTTGGTCCTATTAAGCACGATGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCATGCAAAGTGCACTTGAGGCTTCACCTATCACTGTTGGTGAGCGACAAGCTGTAGTTGAGGAAAAGAGAACTACTACAAGAGTCAGCGGTAGTGGGAGAGGGAGGTATCCTCCAGGAAGAGGTGGTTTCCGAAGCGACAGTTTCAGAGCACGTGGGAAATTTGGCGGTGGACGAGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGGCGTGGTGGTGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCGTCATCTTCAGCAGCATGA 1464 0.444 MKQHVVTVASGLLSFLFKGFVRLIMAMPETIPLTTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLTRSDNNGVMTTVTSVQEIHEKIISLKYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVKRKFSQTFFLAPQEKGYFVLNDVFRYIEVNDAPQLNSASGNAITENTETVHEPESEETHSPKHLVEDPATSTLVEDENHSNGGEVYHPQDEEEGSVIDEEVAEPPTDLSQNDIVTVHDSISAAQDDAPKRSYAFIVMKSNVASGHVYVPRQAARVASAKSSEQWPTTAKSTPVPESFAPISDSAPGSSDLHEEAEGHSIYIRNLPFSATVEQLEEVFKKFGPIKHDGIQVRSSKHGFCFGFVEFEELSSMQSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYPPGRGGFRSDSFRARGKFGGGRGYGRNEFRNQGEFSGQPRSSQRPNQNGGGRGGGRQGVGNRNSTPSSSAA* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02801 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 404 IPR000504 GO:0003723
Phac3g02801 487 MobiDBLite consensus disorder prediction 288 325 - -
Phac3g02801 487 ProSiteProfiles Nuclear transport factor 2 domain profile. 41 157 IPR018222 -
Phac3g02801 487 Gene3D - 30 161 - -
Phac3g02801 487 MobiDBLite consensus disorder prediction 447 466 - -
Phac3g02801 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 387 IPR000504 GO:0003723
Phac3g02801 487 Pfam Nuclear transport factor 2 (NTF2) domain 41 157 IPR002075 -
Phac3g02801 487 SUPERFAMILY NTF2-like 37 158 IPR032710 -
Phac3g02801 487 MobiDBLite consensus disorder prediction 177 196 - -
Phac3g02801 487 Gene3D - 312 410 IPR012677 -
Phac3g02801 487 MobiDBLite consensus disorder prediction 401 487 - -
Phac3g02801 487 SUPERFAMILY RNA-binding domain, RBD 324 432 IPR035979 GO:0003676
Phac3g02801 487 CDD RRM_SF 330 387 - -
Phac3g02801 487 MobiDBLite consensus disorder prediction 288 314 - -
Phac3g02801 487 MobiDBLite consensus disorder prediction 180 196 - -
Phac3g02801 487 SMART rrm1_1 329 400 IPR000504 GO:0003723
Phac3g02801 487 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 37 457 IPR039539 -
Phac3g02801 487 MobiDBLite consensus disorder prediction 204 226 - -
Phac3g02801 487 FunFam Nuclear transport factor 2 family protein 32 161 - -
Phac3g02801 487 CDD NTF2 37 159 IPR018222 -
Phac3g02801 487 FunFam Ras GTPase-activating protein-binding protein 1 316 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02801 Phac-Chr3 30171115 30178131 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02801 K24983 - gmx:100801253 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g02801 3 30171115 30178131 Phac3g02801 3 30171115 30178131 ECH