Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01858 ATGATTCTCATTATCTGCCTCGTTTTCTCTCTTTTTTCCTTCTCCCATGCTTCTGTCCTAGATTTCTGCGTGGCGGATCATGCAGGTCCTGTTGGTCCTGCAGGATACTCCTGCAAGAAGCCTTCAAAGGTCACAGCAGAAGATTTTGCTTTCAGTGGCCTTGGCATTGCTGGTAACACCTCAAACATTATCAAAGCTGCAGTGACCCCTGCATTTGATGCTCAGTTTGCTGGTGTCAATGGCCTTGGTATATCCGCAGCCCGCTTGGACTTAGCAGCAGGTGGAGTTATACCACTTCATACTCATCCAGGAGCTTCAGAATTACTTGTTGTGATACAAGGAAGCATCCTGGCGGGATTCATTTCATCTGACAACACTGTCTACCTCAAAACTCTTAAGAAGGGGGATGTTATGGTATTCCCTCAAGGCTTGCTGCACTTCCAAATCAATGCAGGTGGTTCTTCAGCCCTGGCTATTGTTAGCTTCAGTAGCTCCAATCCTGGTCTGCAAATTCTGGACTTTGCTTTGTTCAAAAGTAATTTCCCCACACCACTGATAGTGGAAACCACTTTCCTTGATGCTGCTCTGGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTTCAGGCTAA 627 0.4641 MILIICLVFSLFSFSHASVLDFCVADHAGPVGPAGYSCKKPSKVTAEDFAFSGLGIAGNTSNIIKAAVTPAFDAQFAGVNGLGISAARLDLAAGGVIPLHTHPGASELLVVIQGSILAGFISSDNTVYLKTLKKGDVMVFPQGLLHFQINAGGSSALAIVSFSSSNPGLQILDFALFKSNFPTPLIVETTFLDAALVKKLKGVLGGSG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01858 208 CDD cupin_OxOx 15 204 IPR001929 GO:0030145
Phac3g01858 208 Pfam Cupin 55 182 IPR006045 -
Phac3g01858 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Phac3g01858 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 199 - -
Phac3g01858 208 SMART Cupin_1_3 52 198 IPR006045 -
Phac3g01858 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Phac3g01858 208 SUPERFAMILY RmlC-like cupins 18 201 IPR011051 -
Phac3g01858 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Phac3g01858 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Phac3g01858 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Phac3g01858 208 FunFam Auxin-binding protein ABP19a 16 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01858 Phac-Chr3 21235680 21236768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01858 1 207 Miscellaneous Gene Families AT5G20630 70.192 2.47e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01858 - - gmx:100800387 352.443