Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00900 ATGGACAAATTTTTCTTTGTTTCTTTACTGGCTTTGCTCATTGCAGCTCATGGAGTTGCAGGAAGCATGATGTTTGACAGCATTGGCATGCTTGAAGAACTTAAAAGCCTGGACTCCATAGACATAGAAGAAGAAACTGAGGTAGAACTTTCTGACATCCCTTCATGGAGAAGCGAGCATGGTGGTAAAGTTCTTGTTAATATTGATAGCTTTGGTGCTGCTGGTGATGGAGAATCTGATGATACTGAGGCTTTGCAAAAAGCATGGGGAGTTGCATGCTCTACTCCAAAATCTGTTTTGCTAATTCCTCAAGGTCGCCGTTACCTAGTCAATGCAACAAGATTCAAAGGGCCTTGTGCAGACAAGCTCATCATCCAGATTGATGGTACATTGGTTGCCCCAGATGAGCCTAAGAACTGGGATCCAAAACTGCCACGGGTTTGGCTTGATTTTTCCAAATTGGATAAAGCTGTTTTTCAAGGTTCTGGAGTCATTGATGGCTCAGGAAGTAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGTCAAATCCTTGCAAAGGTGCACCAACAGCATTTACAATTGATACAAGTACATCCATAAGGGTGAAAGGACTGACAATCCAGAATAGCCAACAGATGCATTTTACCATATCACGATGTGATTCTGTTAGAATTAATGGAGTTAAAGTGTCAGCACCTGGAGACAGTCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTCATAATCCAAGACAGTAAAATCGGAACAGGGGATGACTGCATATCAATTGTCAATGCTAGCTCTAATATCAAAATGAAGAGAATTTATTGTGGACCAGGACATGGAATCAGTATTGGAAGTCTTGGGAAAGACAACTCAACCGGCATCGTCACGAAAGTGATTTTGGATACAGCAGTTCTTAGGGAGACTACCAATGGTCTCAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGTTCGAGGGGTGCGTTTTCAGAATGTGAGAGTAGAAAATGTATCCAACCCCATTATTATAGACCAATTTTACTGTGATTCACCATCTAGTTGTCAGAACCAGACATCAGCTGTGGAGATAAGCGAGGTGATGTACCAGAACATTAGTGGCACTACAATGAGTGCTAAGGCCATTAAATTTGACTGCAGTGACACAACCCCGTGCAGCAATCTTGTTCTTAGCAACGTGGACTTAGACAAACAAGATGGCACAGTTGAAACATATTGTCACTCAGCTCAAGGCTTTCCCTATGGCGTGGTGCACCCTTCTGCTGATTGCCTTAGTTCCACCGACAAAATCTCTCAAGTTGCAGAATCAACTATGGAGGAGGATATTCGTCACACTGAACTATAA 1377 0.4219 MDKFFFVSLLALLIAAHGVAGSMMFDSIGMLEELKSLDSIDIEEETEVELSDIPSWRSEHGGKVLVNIDSFGAAGDGESDDTEALQKAWGVACSTPKSVLLIPQGRRYLVNATRFKGPCADKLIIQIDGTLVAPDEPKNWDPKLPRVWLDFSKLDKAVFQGSGVIDGSGSKWWAASCKKNKSNPCKGAPTAFTIDTSTSIRVKGLTIQNSQQMHFTISRCDSVRINGVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAVLRETTNGLRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPSSCQNQTSAVEISEVMYQNISGTTMSAKAIKFDCSDTTPCSNLVLSNVDLDKQDGTVETYCHSAQGFPYGVVHPSADCLSSTDKISQVAESTMEEDIRHTEL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00900 458 ProSitePatterns Polygalacturonase active site. 277 290 IPR000743 GO:0004650|GO:0005975
Phac3g00900 458 Gene3D - 55 457 IPR012334 -
Phac3g00900 458 SUPERFAMILY Pectin lyase-like 64 437 IPR011050 -
Phac3g00900 458 SMART pbh1 270 290 IPR006626 -
Phac3g00900 458 SMART pbh1 329 350 IPR006626 -
Phac3g00900 458 SMART pbh1 247 268 IPR006626 -
Phac3g00900 458 SMART pbh1 220 246 IPR006626 -
Phac3g00900 458 PANTHER - 63 421 - -
Phac3g00900 458 FunFam Pectin lyase-like superfamily protein 54 438 - -
Phac3g00900 458 Pfam Glycosyl hydrolases family 28 97 417 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00900 Phac-Chr3 7918076 7924186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00900 1 458 Glycoside Hydrolase AT1G70500 64.316 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00900 - - pvu:PHAVU_003G061700g 894.034