Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g00898 ATGAGTGCCTTGAGTTTCAGGGGCTTCACATACATGTTTCTCATTGTATTTCTCATTTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCACTGGAGGCAAAGCAGCAGGGATGTCTCAGATGCTGTGTATAAGAAAAAAGGAAAGAATTATGGAAATGGTCACAACAAAAACCATGGTGGAGGATCAAAGCCAAAGCCTCCATCGCATAAAGGCACCCCAACATTACCAAAGCCTCCACCTCATAAAAACACTCCCTCACCACCATATCCACCACCCTCAAATGAGGATAACCCCACAATTCCCCCACCAAAACCTTACAATGGTGGCCATTCTTCTACCACCACCACCTTCAATGTGCTAGATTTTGGTGCCAAGGGAGATGGAAAAACTGATGACACAAAGGCATTTCAAGCAGCTTGGGCTGAAGCTTGCAAAGTAGAGGCATCAACCATGGTGGTTCCATCAGACTACGTCTTCTTTGTGGGGCCCATTTCATTCTCGGGCCCATACTGTAAACCCAACATCGTTTTTCAGCTTGATGGCACCATTGTTGCACCAACAAACCCCAATGCCTGGGGCAGAGGACTACTACAGTGGTTAGAATTTACTAAGTTGGTGGGAATTACCATTCAAGGAAATGGTATCATTGATGGAAAAGGCTCTGTGTGGTGGCAAGATCATCAATATGATGATCCTATAGATGATGAAGAAAAACTCATAATCCCTTTAAACCAGACTGTACCAAGTCCCCCACTGCCGATTCAAAGTGAGCTGGGAGGAAAAATGCCATCCGTCAAGCCAACTGCACTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATTCTAAATAGTCCACAATGCCACCTCAAGTTTGACAACTGCAATGGGGTCTTGGTCCATAATGTGAGCATATCATCCCCTGGGAACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTGTTGATATATGGCAGCACAATGGCATGTGGAGATGACTGTATTTCCATACAAACTGGATGCTCAAACGTATATGTACACAATGTCAACTGTGGACCAGGGCATGGAATCAGCATTGGAAGTCTAGGAAAGGATAACACCAGAGCCTGTGTTTCCAACATTACTGTCAGGGATGTGAACATGCACAACACAATGACTGGCGTCAGAATCAAAACATGGCAGGTAAAGTATAAGAAACGCAATGCATTTTCCAAGATTAAGCTCACAAAGTAA 1266 0.4423 MSALSFRGFTYMFLIVFLIWSSNFEACIARRGKHWRQSSRDVSDAVYKKKGKNYGNGHNKNHGGGSKPKPPSHKGTPTLPKPPPHKNTPSPPYPPPSNEDNPTIPPPKPYNGGHSSTTTTFNVLDFGAKGDGKTDDTKAFQAAWAEACKVEASTMVVPSDYVFFVGPISFSGPYCKPNIVFQLDGTIVAPTNPNAWGRGLLQWLEFTKLVGITIQGNGIIDGKGSVWWQDHQYDDPIDDEEKLIIPLNQTVPSPPLPIQSELGGKMPSVKPTALRFYGSFNPTVTGITILNSPQCHLKFDNCNGVLVHNVSISSPGNSPNTDGIHLQNSKDVLIYGSTMACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMTGVRIKTWQVKYKKRNAFSKIKLTK* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g00898 421 PANTHER - 118 419 - -
Phac3g00898 421 SUPERFAMILY Pectin lyase-like 117 406 IPR011050 -
Phac3g00898 421 MobiDBLite consensus disorder prediction 73 109 - -
Phac3g00898 421 ProSitePatterns Polygalacturonase active site. 359 372 IPR000743 GO:0004650|GO:0005975
Phac3g00898 421 MobiDBLite consensus disorder prediction 49 117 - -
Phac3g00898 421 Gene3D - 111 420 IPR012334 -
Phac3g00898 421 SMART pbh1 329 350 IPR006626 -
Phac3g00898 421 SMART pbh1 302 328 IPR006626 -
Phac3g00898 421 SMART pbh1 382 403 IPR006626 -
Phac3g00898 421 SMART pbh1 209 230 IPR006626 -
Phac3g00898 421 SMART pbh1 352 372 IPR006626 -
Phac3g00898 421 Pfam Pectate lyase superfamily protein 121 147 IPR024535 -
Phac3g00898 421 Pfam Glycosyl hydrolases family 28 150 231 IPR000743 GO:0004650|GO:0005975
Phac3g00898 421 Pfam Glycosyl hydrolases family 28 269 406 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g00898 Phac-Chr3 7891695 7897747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g00898 2 421 Glycoside Hydrolase AT1G60590 61.682 1.64e-172 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g00898 - - gmx:732602 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g00898 3 7891695 7897747 Phac3g00898 3 7891695 7897747 ECH