Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02200 ATGTCGTTAATATGCGTTCATGGGTGTGGTTTGCTCCGCCGCCAACGCCAAGGCTTGTTCAGTTTATTTTCTTCCTCTGCTTCTTCTGCACTGCTGACGGAAGACCACATGTTTGATGAAAGTCCAAAATCTTATGCTAGTTTTGTGATTGATAGTTCTGTGCCCCATGTTCCCGTAACAAGGAGGGAGTATTTTCCTTTAGTGTCTAGGGTGCTCAAATCACTGAGTTGGAGGGTGGCTAGAGAAGTAAGGTTTGGGAGTTGGGTTGAAAGTCATGGATTTTCTCATTCAATCAATTGCTTTAGGATTATCGTTCATGCGTTTGCTTTGGCGGGTATGCGTTTGGAAGTGTTTGCTTTGCTTAGAGATGTTGTTGGGTTCTGTAATGAGGCCAACTATGACACCTTTGAATTGTTTTCAGCTTTGCTGGATTCACCCCACCATGCTGAAAGATCCGGCGTAGTATTTGATGTGCTTATAAAAGTGTTTGCATCCAACTCTATGTTGGAAAATTCTCTTAATGTGTTTGTGAATGCTAAGCATGTTGGGCTTGAGCCTAGTATAAGGACCTGCAATTTCTTGTTGAAATGTTTGGTTAAAGCTAATAGAGCGGAGTGTGTTAGATGGTTTTTTGAGGAATTGAAGGACCGTGGTCCATCGCCAAATATCCACACCTATACAATCATGATGAACTTTTATTGTAGTTATGTTGTGTGTGATTCAGATATGAGACGGGCTGCTGTGTTTCTAGGGAAAATATATCAGATTGGGGAAAAACCCACTTTTGTCACATATAGTACTTATATTCATGGACTTTGTAAAGTTGGTTGTGTTGAGGCAGCGCTGATGTTAATTCGCAACTTGTACACAAAAAATCAGCCTCTCAATAGTCATTCTTTTAATTCTGTAATTTATGGGTTTTGTAAAAGAGGTGACGTGTGTGAGGCTTTGCAAGTTTTGGTAGAAATGAAGAGGTATGGGATATTGCCAGATGTTTACAGCTACAGCATATTAATCGATACATTCTGCAAGAAAGGGGACCTAATAAAATCTTTTGACTTGTTGGAGGAAATGCAACGCTCCCAGCTAAAACCATCCATTGTTAGCTACACCTCCCTCATTCATGGTCTGTGCAAGAAAAATCTGATACAGCATGCAGTGGAAATATTCCGCAGTATGGGTGCTTCTAGTGTCAAATATGATCAGATTGTTTATGAAACTTTAATTGATGGATTTTGCACGCAAGGTGATGTGGATTCAGCTATCAAGCTTTTAAAGGAGATGACCAGCTATAATTTGGTTCCTACTGCTTTTAGTTACGGCAGTCTAATTAAGGGATACTACAAACTAGGACTATTCGATCCGGCATTAGATGTTTTTGAAACCATGCTACGAGATGGTATTTGGCCAGATACTAGCGCTTGCAATTATATTCTTGGTGTATCTTGTAGGGCAGGTTACCTCAACGCAGCCTTGACGCTGTTGGAGAACTTCGAAGAACATGGATTTAACCTCAACCCACATTCATATAATGCAATCATCGATGAACTTTGTAAAGAAGGCTATCCAGAAAGAGCATTGGAGCTCCTGCCAAGAATGCTTAAAAGGAATGTACCTCCAGTAGCTGTTAATTATATAAATCTTATAACTGGCTTTGCCAAACAGTCAAATATAAAAAGGGCTGTAAAGTTATTCAAGAGAATGACAGAACTGGAGAAGACTTTCAACACTGTCACATATACAATTCTTATGAGTATATTTAGTCATTGTAGCAGAATGCATGAAGCATATGGCATTTTTAAGGAAATGAAAGAGAGGGGTTTGCGTCCAGATCAGATTTCATATACAACTTTAATGGCTGGCTTTTGTAATATTAGAGAATGGAAAAAGGCCTGGGCATTATTTGGAGAAATGTCCAGGGAAGGCATTTTTCCAAATGTATTTACTTATACTTGCATGATTGATGGACTTTGTAAGTCAAACCGAATAGATTTGGCCACCTGGCTGTTTGATAAAATGAGCAGAGATTCAGTTATTCCTGATGTTGCAACTTACACTGTCCTCATTGCTTGGTACCATAAACATGGATACATCGATGAAGCACATAAGCTATATGATATAATGAAGGAAAAGGGTGTTTTGCCAGATGTATTTACTTATACTTGCATGATTTATGGATTTTGCAAGTCAAACCGAATAGATTTGGCCACCTGGCTGTTCGATGAAATGAACAGAGATTCAGTTATTCCCAATGTTGCAACTTACACTGTCCTCATTGCTTGGTACCATAAACATGGGTACACAGATCAAGCACATAAGCTATATGATATAATGAAGGAAAATGGTGTTTTGCCAGATGATATAACTCGTAATATTCTAGGTCTGAATGTGCAGTTCACGAAGTCTAGGAAGCTGTATCAGGGCTCCCATGATATCAAGCTGGATAAGAAGATTAAATATTTATTTCTGGCACTGAGATCCAAAGGAGACATGTTAGCTGGTAAAGAGAGTCAAATTTGGATCCAATTGAAATGTGCGAGACCTGAGTCTCCTAATGCAGGGTTAATTAGGCCTTGCCTCTTCAACAACAACAACTACCTTTTGATGCAGTTCTCTCCTAAGGTTTTTATCAGTGGTATCAAAGTTGAGGAAGATCGAAAGCGTAGGGAATGTGAAAAGATTAATGAAATGCTCACTATGAAAGAAATTCATCGTGGTTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTGTCGAACTGAAGGTTGTATCAAAATGAAATGTGGTATCTGTTACCGCTGCAACAAAGCAATTGATCCATCAGATCCGTATGGACATTCCAGGGACCGTTCATGTGAGCTGTTCCCACGAGAAATGGTTGAGTCCTGGCAAGGGCGCAAAAATCATCGCCAGGCGGTAGAACGTTTACAGGCTGAGCTTTTACCACAGCATGGCTTGGCATGTCCTAACTGTCGTCAATTTAATGCAAAGCTGTGGGGAGCTCTATCTTAA 3012 0.3984 MSLICVHGCGLLRRQRQGLFSLFSSSASSALLTEDHMFDESPKSYASFVIDSSVPHVPVTRREYFPLVSRVLKSLSWRVAREVRFGSWVESHGFSHSINCFRIIVHAFALAGMRLEVFALLRDVVGFCNEANYDTFELFSALLDSPHHAERSGVVFDVLIKVFASNSMLENSLNVFVNAKHVGLEPSIRTCNFLLKCLVKANRAECVRWFFEELKDRGPSPNIHTYTIMMNFYCSYVVCDSDMRRAAVFLGKIYQIGEKPTFVTYSTYIHGLCKVGCVEAALMLIRNLYTKNQPLNSHSFNSVIYGFCKRGDVCEALQVLVEMKRYGILPDVYSYSILIDTFCKKGDLIKSFDLLEEMQRSQLKPSIVSYTSLIHGLCKKNLIQHAVEIFRSMGASSVKYDQIVYETLIDGFCTQGDVDSAIKLLKEMTSYNLVPTAFSYGSLIKGYYKLGLFDPALDVFETMLRDGIWPDTSACNYILGVSCRAGYLNAALTLLENFEEHGFNLNPHSYNAIIDELCKEGYPERALELLPRMLKRNVPPVAVNYINLITGFAKQSNIKRAVKLFKRMTELEKTFNTVTYTILMSIFSHCSRMHEAYGIFKEMKERGLRPDQISYTTLMAGFCNIREWKKAWALFGEMSREGIFPNVFTYTCMIDGLCKSNRIDLATWLFDKMSRDSVIPDVATYTVLIAWYHKHGYIDEAHKLYDIMKEKGVLPDVFTYTCMIYGFCKSNRIDLATWLFDEMNRDSVIPNVATYTVLIAWYHKHGYTDQAHKLYDIMKENGVLPDDITRNILGLNVQFTKSRKLYQGSHDIKLDKKIKYLFLALRSKGDMLAGKESQIWIQLKCARPESPNAGLIRPCLFNNNNYLLMQFSPKVFISGIKVEEDRKRRECEKINEMLTMKEIHRGSKLCPSCDMAICRTEGCIKMKCGICYRCNKAIDPSDPYGHSRDRSCELFPREMVESWQGRKNHRQAVERLQAELLPQHGLACPNCRQFNAKLWGALS* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02200 1003 Pfam PPR repeat 363 393 IPR002885 -
Phac2g02200 1003 Pfam PPR repeat 545 570 IPR002885 -
Phac2g02200 1003 Pfam PPR repeat 509 538 IPR002885 -
Phac2g02200 1003 Pfam PPR repeat 578 608 IPR002885 -
Phac2g02200 1003 Pfam PPR repeat 263 286 IPR002885 -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Phac2g02200 1003 SUPERFAMILY RING/U-box 897 944 - -
Phac2g02200 1003 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 483 805 - -
Phac2g02200 1003 Pfam PPR repeat family 680 729 IPR002885 -
Phac2g02200 1003 Pfam PPR repeat family 750 793 IPR002885 -
Phac2g02200 1003 Pfam PPR repeat family 610 659 IPR002885 -
Phac2g02200 1003 Pfam PPR repeat family 186 235 IPR002885 -
Phac2g02200 1003 Pfam PPR repeat family 296 344 IPR002885 -
Phac2g02200 1003 Pfam PPR repeat family 401 449 IPR002885 -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 368 401 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 754 786 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 613 647 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 404 436 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 263 287 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 299 332 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 648 682 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 578 611 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 508 540 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 684 717 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 718 752 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 333 366 IPR002885 -
Phac2g02200 1003 NCBIfam pentatricopeptide repeat 438 471 IPR002885 -
Phac2g02200 1003 SUPERFAMILY HCP-like 408 605 - -
Phac2g02200 1003 Gene3D Tetratricopeptide repeat domain 239 357 IPR011990 GO:0005515
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 751 785 IPR002885 -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Phac2g02200 1003 Gene3D Tetratricopeptide repeat domain 73 238 IPR011990 GO:0005515
Phac2g02200 1003 Gene3D Tetratricopeptide repeat domain 358 498 IPR011990 GO:0005515
Phac2g02200 1003 Gene3D Tetratricopeptide repeat domain 710 807 IPR011990 GO:0005515
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Phac2g02200 1003 Gene3D - 882 983 - -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Phac2g02200 1003 Gene3D Tetratricopeptide repeat domain 640 709 IPR011990 GO:0005515
Phac2g02200 1003 Gene3D Tetratricopeptide repeat domain 574 639 IPR011990 GO:0005515
Phac2g02200 1003 Gene3D Tetratricopeptide repeat domain 499 573 IPR011990 GO:0005515
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Phac2g02200 1003 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02200 Phac-Chr2 23653204 23658968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02200 315 782 Glycosyltransferase AT1G05670 27.484 3.65e-53 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02200 - - vra:106776742 1167.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g02200 2 23653204 23658968 Phac2g02200 2 23653204 23658968 ECH