LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac2g01164	ATGAAGATGAAATCAAACCTTTCTGCTTTCCTATTGTTGTTCCTTCTCCTTCTCGATCAATCCCTTTCCGCCAAGGCTGGTTTACCTCCTCTTAAAAACTCCATGCTGAAGTGGCTAAAAAGGGGGAAAAAACCACCCAAGCCAGAATGGGATAGTCAAATCTATGAGTTTCTCAGACAAAAGTCTTCTCCTCCACAACAAAACCAACCAACGAAAGGCTTGTCTCGAATCAAAGACTACTTTTCTAACTTTGGCTACCTTCAATCCTCTGGGCCATTCGACGATTATTGGGACCTCCAAACAGTATCAGCCATCAAGACCTTCCAACGCTCTTTCGATCTCCAAGTTACCGGCTCCGTAAACAACCAAACCATTCAACTAATCTCGCAACCACGATGCGCTGTCCCCGACATGGATTTCAACTACAACTTCACCGACAACGTCTCGTGGCCCAACGCCGGTCACCAGTGGTTCCAAAAGAGAAACCTCACCTACGGTTTTCTTCCGGCAAGTGAAATCCCAGCCAACGCTACGAAAGTGTTCAGAGATGCATTCGCGCGGTGGGTGAATGCCACAGGGTTTTTTAACCTGACGGAGACAACCTACGATGACGCGGACATTAAGGTAGGATTCTACACTTTCACTGAAGGCGTTGATGACGACTTGTTTGGCTTAAGCTTTATAAGGGAGAAACCTCCGTCTAACAAGAAGACAGCGGAGATACGTCTGAATGGGAACATGTACTGGGCGCTGCCCAGTGAAAATGATAGCTTGTCGTGGGAGGATGGAATTCTGGACTTGGAGAGTGTGGCGATACACGAGATAGGGCATTTACTTGGACTTGACCACTCTTTCATGAATGAGTCTGTTATGTACCCTTACTTATTGCCATCACAGCAACGAAAGATACAGCTCTCCAATTCTGACAAGAACAACATTCTGCAACAGCATAGTGGTGCCAAGTCTGGTTATTGTGGAAGTTGGGAAGTGCTAGTAATTACCACCTTGTCTCTGGGATTTGGTTATATGGTGCTTCTAGCTTGA	1044	0.4617	MKMKSNLSAFLLLFLLLLDQSLSAKAGLPPLKNSMLKWLKRGKKPPKPEWDSQIYEFLRQKSSPPQQNQPTKGLSRIKDYFSNFGYLQSSGPFDDYWDLQTVSAIKTFQRSFDLQVTGSVNNQTIQLISQPRCAVPDMDFNYNFTDNVSWPNAGHQWFQKRNLTYGFLPASEIPANATKVFRDAFARWVNATGFFNLTETTYDDADIKVGFYTFTEGVDDDLFGLSFIREKPPSNKKTAEIRLNGNMYWALPSENDSLSWEDGILDLESVAIHEIGHLLGLDHSFMNESVMYPYLLPSQQRKIQLSNSDKNNILQQHSGAKSGYCGSWEVLVITTLSLGFGYMVLLA*	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac2g01164	347	Gene3D	Collagenase (Catalytic Domain)	63	319	IPR024079	GO:0008237
	Phac2g01164	347	Pfam	Matrixin	157	315	IPR001818	GO:0004222\|GO:0006508\|GO:0008270\|GO:0031012
	Phac2g01164	347	FunFam	Metalloendoproteinase 5-MMP	65	321	-	-
	Phac2g01164	347	PANTHER	MATRIX METALLOPROTEINASE	59	315	-	-
	Phac2g01164	347	PRINTS	Matrixin signature	128	141	IPR021190	GO:0004222\|GO:0006508\|GO:0008270
	Phac2g01164	347	PRINTS	Matrixin signature	270	295	IPR021190	GO:0004222\|GO:0006508\|GO:0008270
	Phac2g01164	347	SUPERFAMILY	Metalloproteases ("zincins"), catalytic domain	156	313	-	-
	Phac2g01164	347	SMART	col_5	153	320	IPR006026	GO:0006508\|GO:0008237\|GO:0008270
	Phac2g01164	347	Pfam	Putative peptidoglycan binding domain	75	127	IPR002477	-
	Phac2g01164	347	SUPERFAMILY	PGBD-like	66	138	IPR036365	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac2g01164	Phac-Chr2	8348343	8349808	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac2g01164	-		-	gmx:100779298	347.821

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phac2g01164	2	8348343	8349808	Phac2g01164	2	8348343	8349808	ECH