Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00512 ATGGATGATGAGTTTTCTTACGGAAACAAAGCGCCATCTGGTGTCATTAAAGCGATAAAGTTTGATGTCTTAACTGAAAATGATATAGAGAAAGTCTCTGTTTTGGAGATAAATGCAGCCGGGCAGGTCACTGGTTCTACTTTGGGACTTCCAAATACATCTGACGAGTGTGCCACTTGTGGCTCTAAAAACAAAAAGATTTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTTTTCCCATACTCCATCCATATTTTATGTCAGAGATTGCACAAATCTTGAATAAGATTTGCCCTGTTTGTAAATCTATTCGTCATAAATCTAAGGGTGCTCAATTAATCTTTGGAATAAAGCGGTCTATCAATTGCAAATATTGTTCTGGAAATGGGGTGGGCCGTTATCCAGCAATGAAGTTTAAATTTTCGTCCAATGATCTCTACAGAAGAACTGCAATTATTGTTGAAGTGAATGATAAGGCCTCAAAGAAAAGTTTGGGACGAAGCCTGCCAGCTGATTATTGGGACTTTTTACCTTATGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGAGTTTTATCGCCAGGACAGGTTACTTCTTTGTTGAATGATGTTGATCCGAACTTCATTGAAAAATATATTCCAAGAAATAATTTGATTACTCTTAATTGCTTCCCAGTGACTCCAAATTGTCATCGTGTAACAGAAGTCCCTTATGCAATTTCGAATGGAAACCGATTGAGTTTTGATGACAGGACTCGATCTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCTAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTAAGGATTTCTAAGCTAAATCCTGATAAAACACCTACTAGTATTTTTGCTGATATTCAAAAAAAAAAAGTTGCAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGATTCTTGGAAAACGCAATGATAGCACGTTCCGCACTGTGGTTGTTGGTGATCCATCCCTTGAGCTCAGTGAAATTGGTATACCTTGTCATATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTTAACAGGCAGAATTTGGAAAAGCTGCTTTATTGTTGTGAGCTACGCCTGTTAGAGAAGGGACAGATAAATGTTTGCAGAAAAGGTAGTTCAATTCATCTGTTTAAAAAGGAAGATCTACAGATAGGAGACCAATTTTATAGGCCTCTTTGTGATGGTGATAAAGTTCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACTGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAATCCACTCTGTTGTTCTCCACTTCGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCAGTTAGTGCAAGAGTTGAGCTTAATGAGCTTGTTGCTTTGGATAAGCAATTGTTTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCCGAGGATAGTTTAACGGCTGCATATTTGCTAATGGAAGATGGGGTCCTTTTAGATGTTTACCAGATGCAGCAGCTTCAAATGCTTTGTAACAAAGGTTTAGCTCCTCCTGCAATTGTAAAATCTCCTTCAAGTAACAGCTCATTTTGGAGTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCTGATTTTGACTATTCATTTCCTTCAGATGGTGTTGTTGTTAGTGATGGGGAGCTTGTATCTTCTTTTGAGGCTTCTGGATGGTTACGTGATTCTGACTGCAATGTTTTCCAGGGTCTTGTGGAGCATTTTCAAGGGAAATCTCTAAACTTTTTGTTTGCTGCGCAGAATGTTTTGTGTGAATGGTTATCTATGACTGGTTTTAGTGTTTCACTCTCAGATTTGTACCTCTCTTCTGATTCCTATGCACGAAAAAACATGATTGAGGAAATCTGTTATGGCTTACAAGATGCAGAGAAGGCGTGTAATTTCAAGCAGTTATTGTTGGATTGTTATTGTGATTTTTTGTCTGGAAATCATGAAGAGAGTGAAAATTCTATGACTGTTGATGCAGATAGTCTGAATTATGAAAGACAAATATCTGCTGCTCTCAGTCAGGCATCAGTTGATGCTTTTAGGCATGTTTTTCGCAATATTCAAAGTTTAGCTGACAAATATGCATGTACGGACAATACTTTTCTTGCCATGAATAAGGCTGGAAGCAAGAGTAGTTTAGTGAGATTAGCGCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTACGTTTATCTTACAGACTGCCCCGCCATCTTTCATGTGCTGCTTGGAATAGTCAAAAGGGGCTTGATTCAATCGAGATATATTCTGGTACCCTTGAATCTGTTCAGTCTTACATTCCATGTGCCGTGGTCAAAAGCTCATTTCTAACTGGGTTAAATCCACTTGAATGTTTCGTTCATTCTGTAACAATCCGAGCTAGTGGTTTCAGTGAAAATGCAGATGTTCCTGGAACATTAACACGGAGACTAATGTTCTTCATGCGTGATTTGTTTGCTGCATATGACGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGACGAGAACTCTTCATGTGATAAAAGTTTCAAAGAGTATGCTATTGGTGGTGAACCAGTTGGGGCACTTTCTGCTTCTGCAGTTTCAGAAGCTGGATACAGTGCTCTGGATCAACCAGTTAGTCTACTTGAAGCCTCACCTTTGCTGAATTTGAAAAATGTTCTTGAGTGTGGTTCAAGGAAAAAAAATAGTGACCAGTCCGTGTCTTTATTTTTTTCTGAAAAAGTTGGTAAACTGAGACATGGGTTTGAATATGCAGCTTTAGAAGTTAAGAATTATTTGGAAAGATTGCTGTTCTCAAAAATTGTTTCTACTGTGATGATAATATTCACCCCACCTGATAGCAGCAGCCTAGAGAAATACAGTCCTTGGGTCTGCCACTTTCATTTAGACAAGGAAATTCTAAAGAGAAGAAAGTTGAAAGTGCATTCTATCATTGACTATCTTTACCAGAGATATTACTCCCAGAGTACAGAGCCAAAAGTCGGTTTTACCAACTTGAAAATATCAAGCAAAAAGTGTTCTGCTGATTCCATGGCTAAGGAAGGTGAAGACACTTGTATAGACAAAGAAGACAGTGATGATTGCATTACGGTCACAATCGTTGAAAATTCTGAGAATCCTATACAACTGGATTCTGTTCGGGACTTGATGATACCTTTTTTTCTAGGAACAACAATAAAAGGATTTATGGACATCAAGAAGGTTGATATTCTCTGGAATAATCAATCAAAAGTAACAAATTCCTATAATGGTTCTTCTGGTGAATTGTACTTGAGGGTTACTGTGGCCAGCTCGGGTAACACTGGAAGATTCTGGGGTGTACTTGTAAATCATTGTCACAAGATAATGCAGATAATTGACTGGCCACGGAGTCATCCAGACAACATAAATTATCTCTCATCAGCCTTTGGAATTGATGTAGCGTGGCAATATTATTACAAGAGTTTGGCATCAGCAATATGTGATACTGGAAAGTCCATCCTTCCTAAGCATCTGCGTCTTCTTGCCAATAGTATGTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCTCAGCAACGACAACATGCGTCCGTTTCATCACCATTTGTGCAAGCATGCTTTTCTAATCCAGGTAGGAGCTTTATAAAAGCTGCCAAGTCTGAACTCACGGATAATCTCCAGGGCAGCCTGGATGCATTGGCTTGGGGAAACTGTCCCTCTATGGGGACAAGTGGACTGTTTGATATCATATATTCAGAGAAGGGACATGAGGTAGACAAGGCTGTAGATGTATATAAGCTGCTAGAAGCCAGTTTTGACAAGCCGAACAATAAGATTGGTTTACATGCTCACAACAATTTATCTGGCAAATGGGGTTCCGAGTTTAGGCATAAAAATGGTTATGCCTTTAAAGAGGGAAAACAGTGGAAGAACATTCTAAGAAATTTTGTGACAGTAAATGATATTCAGAAGCTGACTACTGCTTCAAGGTGCATATTGAACAAGTATGAAATTGATGAGCTGCTAAGTGAGTTTGACAGATCAACAATTCTAAGAGTTTTGAACTTTCATCCTCGTAGAAGTGAGAAGTTAGGTATTGGACCACAGGACATTAAGGTTGGATGGCATCCTAAATTTAAGGATAGCCGCTGCTTCCATATAGTACGAACTGATGGAACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTCGAGCTCTTGAGGTAGTTGATCCAAAAATGTCAAAGATCCAGAAGAAAAAATGGTCAGCACGTGATGAGGCACAAATCCAGTGCGTGACCAAGGATATTGAGTGA 4419 0.387 MDDEFSYGNKAPSGVIKAIKFDVLTENDIEKVSVLEINAAGQVTGSTLGLPNTSDECATCGSKNKKICEGHFGVIKFPFPILHPYFMSEIAQILNKICPVCKSIRHKSKGAQLIFGIKRSINCKYCSGNGVGRYPAMKFKFSSNDLYRRTAIIVEVNDKASKKSLGRSLPADYWDFLPYDAQQEENYVNRRVLSPGQVTSLLNDVDPNFIEKYIPRNNLITLNCFPVTPNCHRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPTSIFADIQKKKVAENACNSSGLRWIKDVILGKRNDSTFRTVVVGDPSLELSEIGIPCHIAESLQVSEYVNRQNLEKLLYCCELRLLEKGQINVCRKGSSIHLFKKEDLQIGDQFYRPLCDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSARVELNELVALDKQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQLQMLCNKGLAPPAIVKSPSSNSSFWSGKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSFEASGWLRDSDCNVFQGLVEHFQGKSLNFLFAAQNVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEICYGLQDAEKACNFKQLLLDCYCDFLSGNHEESENSMTVDADSLNYERQISAALSQASVDAFRHVFRNIQSLADKYACTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKGLDSIEIYSGTLESVQSYIPCAVVKSSFLTGLNPLECFVHSVTIRASGFSENADVPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQLIQFSYDIDENSSCDKSFKEYAIGGEPVGALSASAVSEAGYSALDQPVSLLEASPLLNLKNVLECGSRKKNSDQSVSLFFSEKVGKLRHGFEYAALEVKNYLERLLFSKIVSTVMIIFTPPDSSSLEKYSPWVCHFHLDKEILKRRKLKVHSIIDYLYQRYYSQSTEPKVGFTNLKISSKKCSADSMAKEGEDTCIDKEDSDDCITVTIVENSENPIQLDSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKVTNSYNGSSGELYLRVTVASSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAFGIDVAWQYYYKSLASAICDTGKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVYKLLEASFDKPNNKIGLHAHNNLSGKWGSEFRHKNGYAFKEGKQWKNILRNFVTVNDIQKLTTASRCILNKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPKFKDSRCFHIVRTDGTVEDFSYRKCILRALEVVDPKMSKIQKKKWSARDEAQIQCVTKDIE* 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00512 1472 CDD RNAP_IV_RPD1_N 24 855 IPR040403 -
Phac2g00512 1472 FunFam DNA-directed RNA polymerase subunit 486 624 - -
Phac2g00512 1472 Gene3D - 1348 1440 - -
Phac2g00512 1472 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 12 1286 - -
Phac2g00512 1472 Gene3D - 628 808 IPR038120 -
Phac2g00512 1472 Pfam RNA polymerase Rpb1, domain 4 708 761 IPR007083 GO:0003677|GO:0003899|GO:0006351
Phac2g00512 1472 Pfam RNA polymerase Rpb1, domain 1 16 255 IPR007080 GO:0003677|GO:0003899|GO:0006351
Phac2g00512 1472 Pfam RNA polymerase Rpb1, domain 2 319 476 IPR000722 GO:0003677|GO:0003899|GO:0006351
Phac2g00512 1472 Gene3D RNA polymerase ii 352 404 - -
Phac2g00512 1472 SMART rpolaneu7 218 506 IPR006592 GO:0003677|GO:0003899|GO:0006351
Phac2g00512 1472 Gene3D RNA polymerase II, clamp domain 7 124 IPR044893 -
Phac2g00512 1472 Gene3D - 314 485 - -
Phac2g00512 1472 PANTHER DNA-DIRECTED RNA POLYMERASE 20 1284 IPR045867 GO:0003899|GO:0006351
Phac2g00512 1472 Gene3D RNA polymerase Rpb1, domain 3 486 627 IPR042102 -
Phac2g00512 1472 FunFam DNA-directed RNA polymerase subunit 1351 1442 - -
Phac2g00512 1472 Pfam RNA polymerase Rpb1, domain 3 483 630 IPR007066 GO:0003677|GO:0003899|GO:0006351
Phac2g00512 1472 Pfam Protein of unknown function (DUF3223) 1366 1437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00512 Phac-Chr2 2565745 2578141 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00512 K16250 - gmx:100796185 2452.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g00512 2 2565745 2578141 Phac2g00512 2 2565745 2578141 ECH