Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02943 ATGCAGAGAATGGCCTACACGTTCTCGTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATTGAGAGCGAGAGGGACCGGAACGCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAAGGTTTTTGTGGGTAACTGCTACGCGGTGAGCCCAGTGATGGTGATCAAGCGGTTCCCGGAACTGAGATCCATTGCGCTCAAGGGGAAGCCGCACTTCGCGGACTTCAATTTGGTCCCCGAGGGTTGGGGCGGTTACGTCTGTCCCTGGATCGCCGCCATGGCATGCGCCTTCCCCTGCCTCGAAGAGATCAGACTCAAGAGGATGGTCATCACTGACGAGAGCTTGGAACTCATCGCCAAGTCCTTCAAAAACTTCAAGGTGCTGGTTCTCACTTCTTGCGAGGGTTTCACCACTGACGGACTGGCCGCCATTGCTGCCAACTGCAGGAATTTGAAGGAGTTGGACTTGCAGGAGAGTGAAGTGGATGACCTTAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTTCACCTCACTAGTTTCACTTAACATTTCTTGTTTAGGCAATGAGGTGAGTTTATCTGCACTAGAGCGTCTTCTTGGGAGGTGTCCCAACCTGCAGACCCTGCGCCTCAATCGTGCTGTGCCCCTGGATAGACTACCCAATCTACTTCGTCGTTGTCCTCAGCTGGTTGAGTTAGGCACTGGAGTCTACTCAACTGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCTGCATTTTCTGGGTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGACGTGCTCCCATCCTACCTTCCAGCTGTCTACCCTGTCTGCTCCAGGCTAACATCACTAAACTTGAGTTATGCTATTATTCAGAGCCCTGATCTTATTAAGCTTATCAGTCAATGCCCAAATTTGTTGCGGTTATGGGTTCTGGATTACATAGAAGATGCTGGTCTTTATAACCTTGCTGCATCATGCAAGGATCTAAGGGAGTTAAGGGTGTTTCCGTCTGACCCATTCGGTTTAGAACCAAATGTTGCATTGACGGAAAAGGGCCTTGTCTCCGTGTCTGAAGGTTGTCCCCGGCTCCAATCAGTTCTATATTTTTGTCGTCAAATGTCTAATGCAGCCCTGCATACAATTGCGCAGAACAGGCCTAATTTGACTCGTTTTCGGCTTTGTATTATTGAGCCTAGAACGCCTGACTATCTTACGCATGAACCACTTGATTCTGGTTTTGGAGCTATTGTAGAACATTGCAAGGATCTGCAACGCCTATCCCTATCTGGTCTTCTTACTGATCGTGTTTTCGAGTATATTGGGACTTACGGGAAGAAGCTGGAGATGCTATCCGTGGCTTTTGCTGGAGATAGTGATTTGGGACTTCATCACGTGCTGTCTGGATGTGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCGCTTTTGGCAAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCAGTGAGTTATGGAGCATGTAAGGTACTGGGTCAAAAAATGCCCAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGATAATTGTCCTGTTGAGAAGCTTTATATTTACAGGACTGTTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACTATGGAAGATGATTCTTCACTAGGCTTGAGTGATCATGCTGTGGATTGA 1776 0.4949 MQRMAYTFSFPEEVLEHVFSFIESERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPVMVIKRFPELRSIALKGKPHFADFNLVPEGWGGYVCPWIAAMACAFPCLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLKELDLQESEVDDLSGHWLSHFPDSFTSLVSLNISCLGNEVSLSALERLLGRCPNLQTLRLNRAVPLDRLPNLLRRCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSRLTSLNLSYAIIQSPDLIKLISQCPNLLRLWVLDYIEDAGLYNLAASCKDLRELRVFPSDPFGLEPNVALTEKGLVSVSEGCPRLQSVLYFCRQMSNAALHTIAQNRPNLTRFRLCIIEPRTPDYLTHEPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKVLGQKMPRLNVEVIDERGPPDSRPDNCPVEKLYIYRTVAGPRLDMPGFVWTMEDDSSLGLSDHAVD* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02943 591 Gene3D - 3 46 - -
Phac1g02943 591 Pfam F-box 8 48 IPR041567 -
Phac1g02943 591 FunFam Transport inhibitor response 1 47 577 - -
Phac1g02943 591 Pfam Transport inhibitor response 1 protein domain 67 113 IPR041101 -
Phac1g02943 591 SUPERFAMILY F-box domain 6 42 IPR036047 GO:0005515
Phac1g02943 591 CDD F-box_AtTIR1-like 9 46 - -
Phac1g02943 591 SMART fbox_2 10 51 IPR001810 GO:0005515
Phac1g02943 591 SUPERFAMILY RNI-like 33 535 - -
Phac1g02943 591 SMART LRR_CC_2 314 337 IPR006553 -
Phac1g02943 591 SMART LRR_CC_2 372 396 IPR006553 -
Phac1g02943 591 SMART LRR_CC_2 105 129 IPR006553 -
Phac1g02943 591 SMART LRR_CC_2 432 455 IPR006553 -
Phac1g02943 591 SMART LRR_CC_2 481 505 IPR006553 -
Phac1g02943 591 SMART LRR_CC_2 130 155 IPR006553 -
Phac1g02943 591 Gene3D Ribonuclease Inhibitor 47 577 IPR032675 -
Phac1g02943 591 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 89 538 - -
Phac1g02943 591 FunFam Transport inhibitor response 1 6 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02943 Phac-Chr1 38117146 38122094 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02943 K14485 - gmx:100779021 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02943 1 38117146 38122094 Phac1g02943 1 38117146 38122094 ECH
Phac1g02943 1 38117146 38122094 Phac7g02588 7 29929916 29933177 PCT