Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02668 ATGGAGAGTGGAAATTGCAGTTGCAACACAAGATATGGTATTGCTACCGGTGGGGATAGGTGGCACCCAAGCCTCCATTGCAAATCCTTCAAGTCTTCTTCCCTTTCCCTCAAACCACCATCCTCCAAACCTTATTCCCTCTCTTTCCGCCGCAACCTCCGCCATGTCACACACTACCTACCGCCGGACTCCCACTACCTCGTCCACGCACTCCACGTCTCCTCCCGCGCTGCCGACACCCAACTCGTCAAGACCGTCCACGCCACGCTGCTTAAACTCCACGAACACGACACACGCCTTTTCAACGCCCTCATCTCCGCTTACCTCAAACTCCGCCTCTTCCCTCACGCGCTCCGTCTCTTCCTCTCCCTCCCTTCACCCAACGCCGTCTCATACACCACCCTCATCTCCGCCCTATCCAAGTGGCCCCACCACGAGCGCCATGCGCTCAAGCTCTTCCTCCGAATGACGCGCTCCCACCTCATCCCCAACTCGTACACATACGTCGCCGTTTTAACTGCCTGCACAAGAATCCTCCACTTCCAATTGGGCCTCCAGGTCCACGCTGCCGCTCTCAAAACGGCTCATTTCGATTCCACCTTCGTCGCAAACGCCCTCGTCTCTCTCTACGCCAAACACGCCCCTTTCCACGTTGCGCTTAAACTCTTCAACCAAACACGCCAGAGGGACCTTGCTTCGTGGAACACTATTATCTCTGCCGCGGTGCAGGAATCCATGTACGACACTGCGTTTCAGTTATTCCATGACATGCAGACGACGGATGCGTTTCGAGTCGATGATTTCACCTTGTCGATACTTCTGTCCGCGTGTGCGTCTTTTGTGGAAGGTCAGCAAGTTCACGCGCACGCTGTTAAATTAGGGTTGGAAACTAGTTTGAACGTTGGGAATGGACTCACTGGGTTTTACACTAACTTTGGAACCCTTGAGGATGTGGAGTGGTTGTTTGAGGAGATGAAAGTGAGGGATGTTATAACTTGGACTCAGATGGTGACCGTGTATATGGAGTTTGGGTTGGTGGATTTGGCTCTGAAGGTGTTTGATGAAATGCCCGAGAAGAATTCTGTGTCTTATAACACCGTTTTGTCTGGGTTTTGTCAAAACGAGAAAGGCTTAGAGGCGCTGAAGTTGTTCGTCAAAATGGTGGAGGAGGGTTTGGAGTTGACGGATTTTAGTTTAACTAGTGGAGTAAATGCTTGTGGACTGCTTGGTGATCCCAGGGTCAGCAAGCAGGTTCATGGGTTTACCGTGAAGTTTGGGTTTGGGTCAAATGCCTGTATTGAAGCGGCATTGCTTGACATGTACACGAGGTGTGGGAGCATGGTGGATGCTGAGAAGATGTTTCTGAGATGGGAGGTGGAGCAGTTTAGCTCTGTGTCTTGGACAGCCATGATATGTGGCTATGCTCGAAACGGGCGGCCAGAGGAGGCCATTTCTCTTTTCCACATTGGTCGATCGAATGAAAAGGTGATTATGGATGAAGTTGTGGTGACTTCGATGCTTGGTATTTGTGGAACTGTTGGCCATCATGATATGGGTAAGCAAATTCACGGTCATGTTGTTAAATGTGGCTTGGGATCTAATTTGGAAGTCGGAAATGCACTTCTTAGCATGTATTTTAAGTGTGGGAACGTGGACGATGCGATGAAGTTGTTTCATGATATGGCTTATACAGATATAGTTACATGGAATACTTTGATCTCGGGAAATCTTATACACAGACAGGGGAACAGAGCATTGGAAGTATGGGTGGAAATGCAGGAGAAGAACATAAAGCCTGACCAAGTTACATTTGTTTTGATAATTTCAGCTTACAGGCAAACTAACTCAAATTTGGTTGATGATTGTCGTAGTTTGTTTAACTCGATGAGAACTGTTTATCAAGTTGAGCCCACATCCTTGCATTATGCTTCCTTCATCAGTGTTTTGGGTCACTGGGGTTTTCTGCAAGAAGCATTAGAAACTATCAATAAAATGCCTTTTCAGCCTTCTGCTCTTGTTTGGCGCGCTTTGCTGGATGCTTGCAAACAGCATCAGAATAATATCATTGGAAGATGGGCTGCTCAGAATATTCTTTCCTTCGAACCTAAAGATCCTTCAACGTTTATACTTGTTTCAAATCTGTATTCTGCTTCTGGGAGATGGGACCGCTCCGAAATGGTCAGGGACGAGATGAGACAAAAGGGGATTCGCAAACACCCAGCTCAAAGTTGGATCATTTCTGAGAAGAAAATACATACATTTTATCCGAGAGATAGATCACATCCTCAGGAGAAAGACATATACAGTGGTTTGGAAATTCTGATCTTGGAGTGCCTAAAAGTTGGATATGAACCTGACACAAGCTTTGTTCTCCATGAAGTAGAGGAGCATCACAAGGAAATTTTTCTATTCCATCACAGTGCTAAACTGGCAGCAACTTATGGGATACTGATGACCAAGCCTGGAAAGCCCGTTCGAATTGTAAAGAACATCCTTCTTTGTGGGGACTGCCATACATTTTTAAAATATGCATCAATTGTCACGAAAAAAGATATATTTCTGAGAGATTCATCTGGATTTCATTGTTTCTCCGGTGGCCAGTGCTCGTGTAAAGACTGCTGGTGA 2625 0.4693 MESGNCSCNTRYGIATGGDRWHPSLHCKSFKSSSLSLKPPSSKPYSLSFRRNLRHVTHYLPPDSHYLVHALHVSSRAADTQLVKTVHATLLKLHEHDTRLFNALISAYLKLRLFPHALRLFLSLPSPNAVSYTTLISALSKWPHHERHALKLFLRMTRSHLIPNSYTYVAVLTACTRILHFQLGLQVHAAALKTAHFDSTFVANALVSLYAKHAPFHVALKLFNQTRQRDLASWNTIISAAVQESMYDTAFQLFHDMQTTDAFRVDDFTLSILLSACASFVEGQQVHAHAVKLGLETSLNVGNGLTGFYTNFGTLEDVEWLFEEMKVRDVITWTQMVTVYMEFGLVDLALKVFDEMPEKNSVSYNTVLSGFCQNEKGLEALKLFVKMVEEGLELTDFSLTSGVNACGLLGDPRVSKQVHGFTVKFGFGSNACIEAALLDMYTRCGSMVDAEKMFLRWEVEQFSSVSWTAMICGYARNGRPEEAISLFHIGRSNEKVIMDEVVVTSMLGICGTVGHHDMGKQIHGHVVKCGLGSNLEVGNALLSMYFKCGNVDDAMKLFHDMAYTDIVTWNTLISGNLIHRQGNRALEVWVEMQEKNIKPDQVTFVLIISAYRQTNSNLVDDCRSLFNSMRTVYQVEPTSLHYASFISVLGHWGFLQEALETINKMPFQPSALVWRALLDACKQHQNNIIGRWAAQNILSFEPKDPSTFILVSNLYSASGRWDRSEMVRDEMRQKGIRKHPAQSWIISEKKIHTFYPRDRSHPQEKDIYSGLEILILECLKVGYEPDTSFVLHEVEEHHKEIFLFHHSAKLAATYGILMTKPGKPVRIVKNILLCGDCHTFLKYASIVTKKDIFLRDSSGFHCFSGGQCSCKDCW* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02668 874 FunFam Pentatricopeptide repeat-containing protein At5g03800 283 415 - -
Phac1g02668 874 Pfam E motif 684 745 IPR046848 -
Phac1g02668 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Phac1g02668 874 Pfam PPR repeat 642 665 IPR002885 -
Phac1g02668 874 Pfam PPR repeat 539 561 IPR002885 -
Phac1g02668 874 Pfam PPR repeat 465 488 IPR002885 -
Phac1g02668 874 Pfam PPR repeat 101 122 IPR002885 -
Phac1g02668 874 Pfam PPR repeat family 127 175 IPR002885 -
Phac1g02668 874 Pfam PPR repeat family 565 611 IPR002885 -
Phac1g02668 874 Pfam PPR repeat family 230 278 IPR002885 -
Phac1g02668 874 Pfam PPR repeat family 359 406 IPR002885 -
Phac1g02668 874 FunFam Pentatricopeptide repeat-containing protein103 616 766 - -
Phac1g02668 874 Pfam DYW family of nucleic acid deaminases 782 874 IPR032867 GO:0008270
Phac1g02668 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 163 IPR002885 -
Phac1g02668 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Phac1g02668 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Phac1g02668 874 NCBIfam pentatricopeptide repeat 362 395 IPR002885 -
Phac1g02668 874 NCBIfam pentatricopeptide repeat 539 561 IPR002885 -
Phac1g02668 874 NCBIfam pentatricopeptide repeat 567 600 IPR002885 -
Phac1g02668 874 NCBIfam pentatricopeptide repeat 233 259 IPR002885 -
Phac1g02668 874 NCBIfam pentatricopeptide repeat 331 360 IPR002885 -
Phac1g02668 874 NCBIfam pentatricopeptide repeat 465 488 IPR002885 -
Phac1g02668 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Phac1g02668 874 Gene3D Tetratricopeptide repeat domain 286 415 IPR011990 GO:0005515
Phac1g02668 874 Gene3D Tetratricopeptide repeat domain 617 753 IPR011990 GO:0005515
Phac1g02668 874 Gene3D Tetratricopeptide repeat domain 416 518 IPR011990 GO:0005515
Phac1g02668 874 Gene3D Tetratricopeptide repeat domain 144 285 IPR011990 GO:0005515
Phac1g02668 874 Gene3D Tetratricopeptide repeat domain 519 616 IPR011990 GO:0005515
Phac1g02668 874 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 60 177 IPR046960 GO:0003723|GO:0009451
Phac1g02668 874 FunFam Pentatricopeptide repeat-containing protein103 515 615 - -
Phac1g02668 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Phac1g02668 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 359 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02668 Phac-Chr1 36052204 36055367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02668 61 874 Glycoside Hydrolase AT3G49170 34.017 2.38e-149 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02668 - - gmx:100784704 1418.29