Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01873 ATGGCCCTCCTTAAACACCTCCTCCTCTCCCTCCCCATTTTCATCATTTCTTTTGTTTTTTGTCATGCCACCTTGCAAGAGGACCCACTTACCAGTATATATGTTCATCATTCACCTTCCACTGATAATGGTGGGACATTATTCAAGAACTTCAACAAGCAAAGCACAAATCTTTTGAGCTTAAACAGGTTGGAGAAGCGTAGCTCCCTTAGAAAGGTTAATGTCAATGATTATGGAGCTGAGGGGAGTGGTGATACTGATGACTCAGAGGCTTTCAAGAAGGCTTGGGATGTGGTATGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTGAGGAGAATTATCTGCTCAAACCAATCAGATTCTCTGGCCCTTGCAAACCTAACATTGAAGTCCAGATTTCTGGAATCCTTGAAGCATCAGATGATCCATCAGATTACAAGGAAGACAGCAGACACTGGCTTGTGTTTGAGAATATTAAGAAACTGTTTGTTTATGGTGGTGGAACCATCGATGGAAACGGCAAAATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGCGACCATGCAAGGATGCTCCAACGGCTCTGACTTTCGATAACTGTGAGGACTTGATAGTTGAGAACCTGAACATAGAAAATGCTCAACAAATCCACGTTTCATTCCAAGACTCCGAGAATGTTAAGGTTTCTGGGCTTAACGTGATTGCACCGGAGGATAGCCCAAACACCGATGGGATTCATGTCACAAATACGCAAAACATCCAAATCTCAGATTCTGTCATAGGAACTGGTGATGATTGCATATCTATTGTACATGGATCTAAAAATGTAGAAGCTACAAATATTACATGTGGACCGGGTCATGGTATCAGTATTGGAAGCTTAGGGGCCGGAAAATCCAAGGAAATTGTTTCAGGAATATTAGTGAATGGAGCCAAGATTTTTGGAACCAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGTGACATCCAATTTCAGAACATTGAGATGGAGAATGTGACCAATCCCATAATAATCAATCAGAATTACTGTGACAAGAAGAAAAAACCATGCAAAAAACGGCTTTTGCAGAAATCCGCTATTCAAATCAAGAATGTGTTGTACCAGAACATAACTGGTACAAGTGCTTCTGATATAGCTGTGAAGTTTGACTGCAGTGAGAAATTTCCGTGCCAAGAGATAAAATTGCAGAACATAGACCTTGAGTGTGAAGACGGAGATGATGCTGAGGCTTGGTGTAACAATGTTGAATTATCTTACTTAGGACACGTTAAGCCTCGTTGCAGTTCAGAAAACATTTTTACCTCCTTATGGAAATACTTTTCATGGTATATATGA 1380 0.4087 MALLKHLLLSLPIFIISFVFCHATLQEDPLTSIYVHHSPSTDNGGTLFKNFNKQSTNLLSLNRLEKRSSLRKVNVNDYGAEGSGDTDDSEAFKKAWDVVCSSGEAILVVPEENYLLKPIRFSGPCKPNIEVQISGILEASDDPSDYKEDSRHWLVFENIKKLFVYGGGTIDGNGKIWWKNSCKRNKKRPCKDAPTALTFDNCEDLIVENLNIENAQQIHVSFQDSENVKVSGLNVIAPEDSPNTDGIHVTNTQNIQISDSVIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLGAGKSKEIVSGILVNGAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMENVTNPIIINQNYCDKKKKPCKKRLLQKSAIQIKNVLYQNITGTSASDIAVKFDCSEKFPCQEIKLQNIDLECEDGDDAEAWCNNVELSYLGHVKPRCSSENIFTSLWKYFSWYI* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01873 459 SMART pbh1 225 251 IPR006626 -
Phac1g01873 459 SMART pbh1 334 355 IPR006626 -
Phac1g01873 459 SMART pbh1 202 222 IPR006626 -
Phac1g01873 459 SMART pbh1 252 273 IPR006626 -
Phac1g01873 459 SMART pbh1 305 326 IPR006626 -
Phac1g01873 459 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Phac1g01873 459 FunFam Polygalacturonase QRT2 59 443 - -
Phac1g01873 459 Pfam Glycosyl hydrolases family 28 106 431 IPR000743 GO:0004650|GO:0005975
Phac1g01873 459 PANTHER - 73 430 - -
Phac1g01873 459 SUPERFAMILY Pectin lyase-like 71 447 IPR011050 -
Phac1g01873 459 Gene3D - 56 451 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01873 Phac-Chr1 28442223 28445408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01873 7 443 Glycoside Hydrolase AT3G07970 51.927 4.80e-147 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01873 K01184 - gmx:100797601 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01873 1 28442223 28445408 Phac1g01873 1 28442223 28445408 ECH