Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01619 ATGTACCTTTCCCTGCCACTCCAATCCTCCACTGCCAGTAGAACTATGACAGTGACAGTCTTTTCTTGTGATGGGGCTGCCCTTCCATCTCCTTGTACAGTAACTGTCCCTAAGCAGGGCCGAATCAAAGATCTCGTCCAGGCACTTAGCAATGCCTGCTCATTGAAGCACAATGAGAGGCTATTGCTTGTGGAGATACGAAACCATTTGATCCATAGATATTTGGAAGATCCTGTTCATTTGTCTACTATTAAAGATGATGAGCGTCTTGCTGCTTACAAAATTCCAAAGATAGACAAGAACACAAAGTATCTCCAGTTGATACATCGCCGAAGAGAACAGAGTAGTGACTCACACGTCATATCAGGATGGAAACCATATGGAACACCTATTGTTTCTTTGATTTCATGTGATGATACAGTCACAAGAGGTGATATACAAGTAATAGTTAATCGTATTCTTTCCCCTCTGCTAAGGAGAGGTGGTAATGTAGAACAAGCTACTACTTCTGAAGCAAGCATCCCAAAAGCAGCACCTGATGAATGCAGTCTTACTAATGATGATGCATGTGCTGGCAACATGGTTTCAAATTCATTAAATAAAGAATTTACCAATTCAAAGGCACCATCAATGCCTACGTTACCTCTTCTCTTGGTAGGTGATAACAATGCTTGCATTGATCTTTCAATGGGCGAGGAGAAAGTGGTTAAACTGCCTCAATCATCCCCAAAAGTTTTAGTGTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATCCAATTGAGAGTTTGCCTGAAGTTTTAAAATATGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAAGCTTTTCTGCGCGAAGAACCTCTGGTGCCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGACAAGCTAGCAAGAAGCTTGATTTGTGGAGGCTCCCAGAGGTTTTGGTAATTCATTTGAAGAGGTTTTCATACAGCAGGTCAATGAAGCATAAACTGGAGACTTTTGTTAACTTTCCCATCCATGATTTTGATTTAACTAATTACATAGCCAACAAAAACAACTCTCGCCGGCAACTTTACGAACTGTATGCCCTTACAAATCATTATGGTAGTATGGGTAGCGGGCATTACACTGCACATATTAAGCTTTTAGATGAGAACAGGTGGTACAATTTTGATGACAGCCACATAACACTGATAAGTGAGGATGAGGTTAACACCGCTGCTGCCTATGTTCTATTTTACCGGAGGGTGAAGACGGAGGAGGCAGCCATTAGCAATGGAGCTTAG 1335 0.4187 MYLSLPLQSSTASRTMTVTVFSCDGAALPSPCTVTVPKQGRIKDLVQALSNACSLKHNERLLLVEIRNHLIHRYLEDPVHLSTIKDDERLAAYKIPKIDKNTKYLQLIHRRREQSSDSHVISGWKPYGTPIVSLISCDDTVTRGDIQVIVNRILSPLLRRGGNVEQATTSEASIPKAAPDECSLTNDDACAGNMVSNSLNKEFTNSKAPSMPTLPLLLVGDNNACIDLSMGEEKVVKLPQSSPKVLVYIDWSQKLLEKYDTHPIESLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHITLISEDEVNTAAAYVLFYRRVKTEEAAISNGA* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01619 444 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 433 IPR028889 -
Phac1g01619 444 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 432 - -
Phac1g01619 444 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 375 392 IPR018200 GO:0004843|GO:0006511
Phac1g01619 444 CDD Peptidase_C19R 278 431 - -
Phac1g01619 444 Gene3D Cysteine proteinases 242 441 - -
Phac1g01619 444 Pfam Ubiquitin carboxyl-terminal hydrolase 306 430 IPR001394 GO:0004843|GO:0016579
Phac1g01619 444 Pfam Ubiquitin-specific protease C-terminal 3 137 IPR029346 -
Phac1g01619 444 SUPERFAMILY Cysteine proteinases 285 432 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01619 Phac-Chr1 24423219 24445272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01619 286 439 Miscellaneous Gene Families AT4G31670 33.121 1.14e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01619 - - gmx:100794067 806.594