Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01316 ATGGACAAGCTAAGCCAATATGAACGTGTATTCAAGCAGTTTGACGAGAATGGTGACGGCAAGATATCGGCGTGGGAGCTGCAACAATGCGTGGAGGCCATGGGTGAGGAGTTGTCTGCTGAGGATGCGGCGGCGACTGTGACTGTGATGGACGCCGACGGGGATGGGATGGTGGGGTTTGATGATTTTGTGAGGTTTGTGGAGGGAGGGAAAGAGGAAGAGAAAGAGAATGACCTAAGAGAGGCTTTTAAGATGTATGAGATGGAAGAGAGTGGTTGCATCACTCCGAGAAGTCTTAAAATGATGCTTAGTAGGTTGGGTGAATCTACGAGTATAGATGAGTGTGAAGTTATGATAGCTAGATTTGATCTTGATGGAGATGGGGTGCTCACTTTCGATGAATTTAAGGTCATGATGTTGTAA 423 0.4681 MDKLSQYERVFKQFDENGDGKISAWELQQCVEAMGEELSAEDAAATVTVMDADGDGMVGFDDFVRFVEGGKEEEKENDLREAFKMYEMEESGCITPRSLKMMLSRLGESTSIDECEVMIARFDLDGDGVLTFDEFKVMML* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01316 140 Gene3D - 1 71 - -
Phac1g01316 140 CDD EFh 6 67 IPR002048 GO:0005509
Phac1g01316 140 CDD EFh 78 139 IPR002048 GO:0005509
Phac1g01316 140 FunFam Calcium-binding protein CML38 70 140 - -
Phac1g01316 140 Pfam EF-hand domain pair 90 139 IPR002048 GO:0005509
Phac1g01316 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Phac1g01316 140 PANTHER CALCIUM BINDING PROTEIN 74 139 - -
Phac1g01316 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Phac1g01316 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Phac1g01316 140 Gene3D - 72 140 - -
Phac1g01316 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Phac1g01316 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Phac1g01316 140 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Phac1g01316 140 SUPERFAMILY EF-hand 3 139 IPR011992 -
Phac1g01316 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Phac1g01316 140 SMART efh_1 78 106 IPR002048 GO:0005509
Phac1g01316 140 SMART efh_1 6 34 IPR002048 GO:0005509
Phac1g01316 140 SMART efh_1 114 140 IPR002048 GO:0005509
Phac1g01316 140 SMART efh_1 42 70 IPR002048 GO:0005509
Phac1g01316 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01316 Phac-Chr1 14487165 14487587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01316 2 139 EF-hand Containing Proteins AT1G76650 52.174 8.43e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01316 K13448 - gmx:100784553 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01316 1 14487165 14487587 Phac1g01316 1 14487165 14487587 ECH
Phac1g01316 1 14487165 14487587 Phac4g00636 4 7710012 7710916 PCT