LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g01313	ATGGCTGTGACTCCCAAAATCGCTCCTTCAATGCTCTCTTCCGACTTCGCCAATTTGGCTTCCGAGGCTCACCGCATGCTCGACTTTGGCGCCGATTGGCTTCACATGGACATCATGGATGGGCATTTTGTCCCCAATTTAACTATTGGTGCTCCAGTTATCGAAAGTCTGAGAAAGCACACAAAGGCATATTTGGACTGCCACCTTATGGTTACAAATCCTCTTGATTATGTTGAACCCTTGGCAAAAGCTGGTGCTTCTGGTTTTACATTTCATGTAGAGGCATCGAAAAATGACTGGAAAGAACTTATCCAAAGAATTAAGTCACATGGCATGAGGCCCGGGGTATCGTTAAAGCCTGGGACCCCCATTGAAGAGGTCTTTCCTCTGGTGGAAGCTGAAAATCCCGTGGTAATGGTTCTTGTGATGACTGTAGAACCTGGATTTGGAGGACAAAAGTTTATGCCAGAGATGATGGATAAAGTTCGTATGCTTAGGAAGAAGTATCCATCGCTTGACATTGAGGTTGATGGTGGTTTAGGACCTTCAACTATAGAGGTGGCTGCATCGGCAGGGGCAAATTGCATTGTTGCTGGAAGTTCAGTGTTTGGTGCCCCTGATCCAGCTCAAGTAATATCCTTGCTGAGGAATTCTGTTGAGAAAGCCCAACAACAAACCTTAATACAGTAA	690	0.4551	MAVTPKIAPSMLSSDFANLASEAHRMLDFGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLAKAGASGFTFHVEASKNDWKELIQRIKSHGMRPGVSLKPGTPIEEVFPLVEAENPVVMVLVMTVEPGFGGQKFMPEMMDKVRMLRKKYPSLDIEVDGGLGPSTIEVAASAGANCIVAGSSVFGAPDPAQVISLLRNSVEKAQQQTLIQ*	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g01313	229	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 1.	34	48	IPR000056	GO:0005975\|GO:0016857
	Phac1g01313	229	CDD	RPE	6	216	IPR000056	GO:0005975\|GO:0016857
	Phac1g01313	229	PIRSF	RPE	1	228	IPR026019	GO:0004750\|GO:0006098
	Phac1g01313	229	SUPERFAMILY	Ribulose-phoshate binding barrel	5	221	IPR011060	-
	Phac1g01313	229	Gene3D	Aldolase class I	1	226	IPR013785	-
	Phac1g01313	229	FunFam	Ribulose-phosphate 3-epimerase	1	226	-	-
	Phac1g01313	229	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 2.	140	162	IPR000056	GO:0005975\|GO:0016857
	Phac1g01313	229	PANTHER	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	5	224	IPR000056	GO:0005975\|GO:0016857
	Phac1g01313	229	Hamap	Ribulose-phosphate 3-epimerase [rpe].	4	218	IPR026019	GO:0004750\|GO:0006098
	Phac1g01313	229	NCBIfam	ribulose-phosphate 3-epimerase	6	216	IPR026019	GO:0004750\|GO:0006098
	Phac1g01313	229	Pfam	Ribulose-phosphate 3 epimerase family	6	203	IPR000056	GO:0005975\|GO:0016857

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g01313	Phac-Chr1	14455371	14464670	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g01313	K01783		-	gmx:100500085	421.779

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phac1g01313	1	14455371	14464670	Phac1g01313	1	14455371	14464670	ECH