Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00478 ATGTTTTTGCTGATGATAATTGAACATGGATGTCTTCGTTTTGCAGATCCAAATGGGCCTATGTACTACAAAGGTGTTTACCACCTTTTCTACCAGCATAACCCTGAAGCAGCAACCTTTGGTGATAGGATTGTATGGGGTCACTCAGTATCCTATGATCTTATCAATTGGATTCATTTGAATAATGCTATTGAACCAAGTGGATCATATGATATTAATAGTTGTTGGTCAGGCTCAGCCACTATAATCCCTGGGAAAGAACAGCCTATGATTTTGTACACGGGAATTGACCATAAGAAACATCAAGTTCAGAACTTAGCTGTGCCAAGGAATCTATCAGACACCTTCTTAAGGGAATGGGTGAAACACTCTAAGAACCCTGTCATGACTCCACCAAGTGGAGTTGAAGTTGATAATTTCAGAGACCCTTCAACTGCTTGGAAGGGAAAGGATGGGAAATGGAGGGTAGTAGTTGGTGCTCAAAAGGGTGATGAAGGGAAGGCAATTCTCTACCAAAGTGAGGATTTTGTTAATTGGATAGTGGATCCTAATCCCTTTTATGCATCACAGAATACCGGAGTTTGTGAGTGTCCAGACTTTTTCCCTGTATACATGAATGGCAGCACAAATGGGGTGGATACATCTGTGCAAAATCCAAGTGTTAGACATGTCTTGAAGATAAGCTACCTACGCAAGCAGCATGATTACTATTTTCTTGGTAAATATGCATCTGATCAGGAAAACTTCATTCCTGATGTCAGGTTTACAGGGACTAGTTCGGACTTGAGGTATGACTATGGTAAATTCTATGCTTCCAAGTCATTTTTTGACTATGCCAAAAACAGGAGAATATTGTGGGGATGGGTGAACGAGTCTGACTCCACACAAGATGACATTGACAAAGGATGGGCTGGTCTACAGTCAATTCCAAGGCAAGTTTGGCTAGATAAAAGTGGGAAGCGATTGGTTCAGTGGCCACTTGAAGAGGTAGAACAACTACGTGGCAAGCACATAAGAATAACGGGGGAGAACCTTGTGCATGGATCACATCTTGAAGTCTCGGGTATCACTGCATCACAGGCCGATGTAGAAGTGTTGTTTGAGCTACCTGAACTAGAAAAGGCTGAGTTTCTTGATCCAAATGGAGTTGATCCCCAACTACTTTGTAGCCAAGAATATGAATCAAGAAGTGGCATAATAGGGCCATTTGGTTTGTTAGCTTTGGCTTCAAAGGATCTCAAAGAGCACACTGCAGTCTTCTTCAGAATATATAGAGCACCCAATAGATATGTATGCCTCATGTGCAGTGACCAAAGCAGGTCCTCATTGAGGCATGACCTTGACAAAACTACATATGGAACTATCTTTGATCTAGATCCCAATCTAAAAAAAATTTCACTAAGAAGCTTGATTGACCACTCCATTATTGAGAGTTTTGGTGATGAAGGGAGAGTTTGCATCACTAGCAGAGTTTATCCATCATTGGCTATAGACAAAGATGCTCATCTTTTTGTATTTAACTATGGAAGCCAGAGTGTGTTGGTCTCAAAACTGAACGCTTGGAGCATGAAACAAGCAGAGATTGGCTATGAGGGAAACATAAGCTATACCTAA 1614 0.4126 MFLLMIIEHGCLRFADPNGPMYYKGVYHLFYQHNPEAATFGDRIVWGHSVSYDLINWIHLNNAIEPSGSYDINSCWSGSATIIPGKEQPMILYTGIDHKKHQVQNLAVPRNLSDTFLREWVKHSKNPVMTPPSGVEVDNFRDPSTAWKGKDGKWRVVVGAQKGDEGKAILYQSEDFVNWIVDPNPFYASQNTGVCECPDFFPVYMNGSTNGVDTSVQNPSVRHVLKISYLRKQHDYYFLGKYASDQENFIPDVRFTGTSSDLRYDYGKFYASKSFFDYAKNRRILWGWVNESDSTQDDIDKGWAGLQSIPRQVWLDKSGKRLVQWPLEEVEQLRGKHIRITGENLVHGSHLEVSGITASQADVEVLFELPELEKAEFLDPNGVDPQLLCSQEYESRSGIIGPFGLLALASKDLKEHTAVFFRIYRAPNRYVCLMCSDQSRSSLRHDLDKTTYGTIFDLDPNLKKISLRSLIDHSIIESFGDEGRVCITSRVYPSLAIDKDAHLFVFNYGSQSVLVSKLNAWSMKQAEIGYEGNISYT* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00478 537 Pfam Glycosyl hydrolases family 32 C terminal 329 522 IPR013189 -
Phac1g00478 537 SUPERFAMILY Concanavalin A-like lectins/glucanases 326 525 IPR013320 -
Phac1g00478 537 Gene3D Glycosyl hydrolase domain; family 43 14 338 IPR023296 -
Phac1g00478 537 SMART glyco_32 16 483 IPR001362 GO:0004553|GO:0005975
Phac1g00478 537 SUPERFAMILY Arabinanase/levansucrase/invertase 14 326 IPR023296 -
Phac1g00478 537 Gene3D - 339 523 - -
Phac1g00478 537 CDD GH32_Fruct1-like 16 315 - -
Phac1g00478 537 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 338 523 - -
Phac1g00478 537 Pfam Glycosyl hydrolases family 32 N-terminal domain 15 326 IPR013148 -
Phac1g00478 537 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 18 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00478 Phac-Chr1 3385953 3389433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00478 16 528 Glycoside Hydrolase AT1G55120 55.449 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00478 K01193 - gmx:100777487 990.719