Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01508 ATGAAGAAAATGAACAACGCTCACACGATGCGCGTGGCATTCACCGTGGCCACAGTAGCCGTTTCAGCTGCTATGATATCCATTTTCTTCTACGCGCGAAGGCGCAAGAAGCGCGACTCTTCTTCTAGTTCGTGCTATTTGCATTCCGAACGGAAACCACAGAGTGCATTCAAGCGCGTTTTATCGGATAATTCCTACACTCCGTTCAAGCACCTCAGCAACGACGAGAATGCTTCGAATTCGCATCCGTTTGAGGCGGAGATTACAGCATTGTTGAAAACTCCTCAGCCTGAAATTGAATTTGGAACTGAGATAGTGGACATGGAAATGAAGGATTCATATGTTTGGGTTCACACCGAGACGCAGTTAAAGGAATTAGTTGATGTGTTGAGCGAAGAGAGGTTTTTTGCTGTGGATACAGAGCAACATAGCTTACGATCTTTTCTAGGCTTTACGGCATTAGTTCAGATTTCTACGCGGGAGAAAGATTATTTGGTTGACGCAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCTGTTTTCGCCAATCCTTCAATTTGTAAAGTGTTCCATGGTGCTGACAATGATATAGTCTGGCTACAGAGGGACTTCCACATATATGTTGTTAACCTATTTGATACATCAAAGGCATGCGAGGTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGATTGGCGACAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCCCGAACAGATGCACACTTTCTGTTGTATATTGCAAATTGTCTGATCAATGAACTCAAACAACTGGACAGCGAAAACTCTTGTTCCAGTGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACATGATATGTTTACAACTTTTCACAAAGGAGATTGAAGCATATCCTGGTGAATCTTCTGCATTATCATTATTTTCTCGTCAAGTGAGTAGTCATGGTTGTCCGTCTATATCAAATGAAACTCAGATTATTGTGAGGCAACTATGCGCATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTCTCGGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCTAGTCACTCTGAAATACCCAAGACCATAGCCCAGGCTGACATCAATATGGAAATGGGCGTGAACTCTTTCATCATTTCCCCATCTCCTGTTGTTTGCAGTCACCTGAGTGATATCTATCATATTCTTGCAAACAAGTTGGTTAATGATGATGATGATATTTATTCAGTGATTCTTCAGAAGTCTATAGGTCAAAATGGGAGTTGTCCACTTTCTATATTTAATTATGCTTTGTTGATAAACAGTAACCTAAGACCTAATTTAGCCCATAAACAACTGGGCCCAAAACATCCTAAACAATTTTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAGTTCTCTTGTAAATCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGGCTACTTTGTTATTGTGACGAGAAGAAGCTTAAATGGTATCTTAGTCGGGATCTTGCAAAACTTGTTGGCCAGGATCCCCCCACTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGACAATGACTTCTATATCCAGAGCAAGAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTATTTACGGTATCGAATAATCCCATCTTGTTACAGAGTACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAGGTCGCACATGCTGCTGCAGAAAAGTACAAGAGGAAAATAGCTGTTGAATTTGGGATTCCTCTCTACCTTCAGAGGGTAGTTCATCCAAGTCAAAAGACTGAAAAACAAATTGAAGAGAATGGTGTATCTCCATTACAGTTACGAACAGCTGCTATGGCTCTTTTAAGCCATGGACCAAGAATGCCTCCAAGTCGCCGAGAAGAACTAACTGAGGTTATAAAGAGATATTATGGAGGAAGAGACATATCTGACGAAGATCTAGAAAGAGCTTTGCAAGTTGGTATGACGCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAAACATTCTACAGGGAATGCTGTAACACTGCTAGAACAGAATAATCATATTGGTTGCTCACCCAGAATGAGTAATGTGGATGACTTAAAAGTTGATGCTCATGATGGCTCATATGCAGATGAAGTAGATACAGAACTTTTTATGAGAAAAGATGATTTTAGAAACTCCACTTCAGCTTCTGATATTACAGTTAATGGACCTGGCTCTGCAACTTTGAATAAAAATGCGATTACAGTTGAAACTGCAGATTGCAATGAAGGCGCCGACTCTGCTGTAAATGTTGATAACAGCAGTCTGAGCAGAAGGGAAACAAATGGACTTAGTGACTTGTCTTGTTCTCCTAATGATGAAAAATCTATACATACCGAACATAATTCAAAACTCTCTCTCTTGGGACATGGACCTCATGGGAAACAAGTTGTAGAACATTTACTGAGGGAGTATGGTGAAGATGGTATTCGAGACTTTTGTCAGAGATGGAGACAAGTATTTGTGGACGCTGTAAAACCACGTTTTCTTCCTGTTGGTTGGGATGTAAAACACAGGCTTTGA 2733 0.4083 MKKMNNAHTMRVAFTVATVAVSAAMISIFFYARRRKKRDSSSSSCYLHSERKPQSAFKRVLSDNSYTPFKHLSNDENASNSHPFEAEITALLKTPQPEIEFGTEIVDMEMKDSYVWVHTETQLKELVDVLSEERFFAVDTEQHSLRSFLGFTALVQISTREKDYLVDAIALHDFMGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHFLLYIANCLINELKQLDSENSCSSDKFHFVLEASRRSNMICLQLFTKEIEAYPGESSALSLFSRQVSSHGCPSISNETQIIVRQLCAWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIPKTIAQADINMEMGVNSFIISPSPVVCSHLSDIYHILANKLVNDDDDIYSVILQKSIGQNGSCPLSIFNYALLINSNLRPNLAHKQLGPKHPKQFSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDEKKLKWYLSRDLAKLVGQDPPTIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAVEFGIPLYLQRVVHPSQKTEKQIEENGVSPLQLRTAAMALLSHGPRMPPSRREELTEVIKRYYGGRDISDEDLERALQVGMTPHERRRFEKKRGFSFKHSTGNAVTLLEQNNHIGCSPRMSNVDDLKVDAHDGSYADEVDTELFMRKDDFRNSTSASDITVNGPGSATLNKNAITVETADCNEGADSAVNVDNSSLSRRETNGLSDLSCSPNDEKSIHTEHNSKLSLLGHGPHGKQVVEHLLREYGEDGIRDFCQRWRQVFVDAVKPRFLPVGWDVKHRL* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01508 910 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 43 882 IPR045092 GO:0000175|GO:0000467
Phac11g01508 910 SMART 35exoneu6 114 282 IPR002562 GO:0003676|GO:0006139|GO:0008408
Phac11g01508 910 MobiDBLite consensus disorder prediction 824 842 - -
Phac11g01508 910 Gene3D HRDC domain 335 438 IPR044876 -
Phac11g01508 910 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 51 319 - -
Phac11g01508 910 Pfam 3'-5' exonuclease 114 281 IPR002562 GO:0003676|GO:0006139|GO:0008408
Phac11g01508 910 MobiDBLite consensus disorder prediction 824 846 - -
Phac11g01508 910 Pfam HRDC domain 350 388 IPR002121 GO:0003676
Phac11g01508 910 SUPERFAMILY Ribonuclease H-like 52 284 IPR012337 -
Phac11g01508 910 Gene3D - 51 319 IPR036397 GO:0003676
Phac11g01508 910 CDD Rrp6p_like_exo 110 303 - -
Phac11g01508 910 SUPERFAMILY HRDC-like 342 429 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01508 Phac-Chr11 12797051 12804351 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01508 K12951 - gmx:100791485 1501.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac11g01508 11 12797051 12804351 Phac11g01508 11 12797051 12804351 ECH