Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01405 ATGGCTATGGCGCCTCGCAAACCTCGCGAGCGTGAAATGCTGTTCGACTCCGTCATCGCGCTCGTCTTCATCCTCGTCGCCTGCGTCGACCTCTGCGACGGTGCCACCGTCGTCGACGTCTACCGCCTCATCCAGTACGACATGTCCGGCGTTCCCTTCGGATCTCGACTTGCCAGCCTCAACCATCACGCCGCCTCGCTCCACTTCTCTCCGCACGCTGATCTCTCTCGCACCGTCCTCCTCATACCTCTTCGCGAACTCAACATGTCTTTTGTTCAAGAATATATTGCAGAAAGCAAGCCTCTTGGGGGTTTAATATTTTTGCTTCCCCGGATGTTCAGTTTTGAAAACAAAGATGGTATGGGAAATAACCATCGTGATGGGCTGCTGAAGAATGTACTGGTGGAACTTGAACAAATACTCATACACGCCAACTTACCGTATCCTGTTTATTTTGCATTTGAGGATGACAATATTGATGCTGTATTAGCTGATATCAAGAAGAATGATGTCACTGGTCAACCTGCTACTGCAACAACTGGCGGATACAAATTTGTTGTTTCAGCCGCAGAACCAAGGAAAGTTGTTTCTCCACCCATTACAAATATTCAGGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATTGCGATAGTGGCATCATATGACACCTTTGGGGCTGCTCCTGCATTATCAGTGGGAAGCGATAGTAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGGCTGTTTTCTCTCTTGTATTCTAATCCAAAGACAAGAGGACAGTACAATCTGCTGTTTGGGCTAACATCTGGTGGGCCTTACAACTACAATGGAACTCGTAAGTGGCTTCGGAGCTTTGATCAACGTATGCGTGAGAGCATTGACTATGCTATTTGCTTAGATAGTATTGGCTCTTGGGAAAATGAATTGTGGATTCATGTGTCTAAGCCCCCAGAAAATGCCTTCATTAAAAAAATTGTGGAAGATTTTTCAAGTGTTGCAGAAGAATTAGGCTTTAAAGTGAATTTGAAGCATAAGAAAATAAACATTTCCAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCTGCCACTCTATCTGGACTCTCTACAGCACCTGAATTGCTAGAAAAGACTGGTGGTTTGGTTGACGGCAGGCATTTTGTTAATGAAGCGACTATTGTCAGAAGTGTGAAATTAATTGCTGAAAGTCTTGCGAGGCATATTTATGGACATCAAGGAAAGAACATTCAAATATTTGCTGACAACACTAACTTGGCTGTTAATCCTTCTTATGTTCGATCATGGTTAGATGTTTTGTCCCAAACACCTCGAGTAGCTCCATTTCTCTCTAAAGATGATCCTTTTGTCATGGCACTGAGAAAGGAATTAGAAGATCACACTGACGAGGTAAATCTGCATAGAGATGTGCTAGAGGGGGTGTTCACTTTCTATGATTCAACCAGGGCAAAACTGAATATATATCAGGTTGCAAGTGTGACATTTGACTTGCTGTTGCTTCTAGTATTGGGATCGTATTTAATTGTGCTATTCTGTTTCTTGGTCATCACCACTAGGGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCATCTCGAAAAGTGAAAACTGCATAG 1686 0.4407 MAMAPRKPREREMLFDSVIALVFILVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVQEYIAESKPLGGLIFLLPRMFSFENKDGMGNNHRDGLLKNVLVELEQILIHANLPYPVYFAFEDDNIDAVLADIKKNDVTGQPATATTGGYKFVVSAAEPRKVVSPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLRSFDQRMRESIDYAICLDSIGSWENELWIHVSKPPENAFIKKIVEDFSSVAEELGFKVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSGLSTAPELLEKTGGLVDGRHFVNEATIVRSVKLIAESLARHIYGHQGKNIQIFADNTNLAVNPSYVRSWLDVLSQTPRVAPFLSKDDPFVMALRKELEDHTDEVNLHRDVLEGVFTFYDSTRAKLNIYQVASVTFDLLLLLVLGSYLIVLFCFLVITTRGLDDLISLFRRPPSRKVKTA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01405 561 PANTHER NICALIN 13 561 IPR016574 GO:0009966|GO:0016020
Phac11g01405 561 ProSitePatterns EF-hand calcium-binding domain. 242 254 IPR018247 -
Phac11g01405 561 Pfam Nicastrin 222 359 - -
Phac11g01405 561 Gene3D Zn peptidases 153 387 - -
Phac11g01405 561 CDD M28_nicalin_like 136 427 - -
Phac11g01405 561 SUPERFAMILY Zn-dependent exopeptidases 191 385 - -
Phac11g01405 561 PIRSF Nicalin 3 556 IPR016574 GO:0009966|GO:0016020
Phac11g01405 561 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01405 Phac-Chr11 10836048 10846561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01405 7 559 EF-hand Containing Proteins AT3G44330 72.842 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01405 K26499 - gmx:100779713 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac11g01405 11 10836048 10846561 Phac11g01405 11 10836048 10846561 ECH