Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01084 ATGAGTGACAAAGGAGAAAGAACATGTCCTCTCTGTGCTGAAGAAATGGATTTGACAGATCAGCAGTTGAAGCCTTGCAAATGTGGTTATGAGATCTGTGTCTGGTGCTGGCATCACATAATGGACATGGCTGAGAAGGATGACACTGATGGGCGATGCCCCGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAAGTTAATATGGAGAAAAAGATGAAGACTCAGAAGTCAAAGTCTAAATCATCTGATGGGCGCAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGGTTGCCTCTCAATCTTGCGGATGAAGATCTTCTTCAGCGGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTAGAACAGCAGCTGGTGTCATCCAACAGTTTCCAAATGATACATGCAGTGTATATATAACTTATTCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAGTGTGCCTTGCAGCAATCCGGATTGTCTATATTTGCATGAGATTGGCTCTCAAGAAGATAGCTTTACTAAAGACGAAATAATTTCAGCATACACCAGAAGTCGAGTTCAACAGATCACTGGTGCAACTAACAATATGCAACGGCGGTTAGGGAATGTATTACCTCCTCCACTGGATGACAATATGAACACTACTTCCCCAAAGCCTATTGTGAAAAATCCTTCAAATAACTCTGTTAGCACTGTTAGAGGTTCACCCCCAAATGGAATCTATGAGAGACATATCCCCCTTCCTGCTAGTGCTGCATGGGGTACTCAGGCCACAAATTGTCAGCCCCCAGCTGGAGGTCTATCTTATCCAAATGGGCCATCCAAGCCCAAATCTGATACAGGCAGCAGCTCGCTAGCATTTTCTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGACCACCATCGAGTGATGGCAGTCATAGTATGACAACTAGAGTGAAAAATGAATTGTTGAAACCTGTTAAACAATACAACAATAGTGCGGACGGCCTGGTTAGTGCAGGAGAAAAATCTCCATCTTCTGATGTGTCTCCTGTTCCTGTGAATTTGAACAGCCAGTTATCTTCTCTACCATTGTCTCGAGATAGTGATGGCAATTGTACCACAGCAAATACAATAAATTCTACCAACATGACTGGACAGTCTTGTAACTCTGGTCCTGAGGAAACAATGCCTGCTACCAATGAAGAGATTCCAAATTTGTCCATTGAGTTGTCCTCAATTAACATTGACGGAAATGCTGAACATTGCAGTATAACCAAACCTAATAGCCCGCCTACTGATTATGTCTTGATTAAATCTCCTGAAATTCAAGGATCACAATATAATGACAGATTTAGGGATGTAATAACTACAAATGTGGCTGGTATAGCTACACCAGATAATGAGGTTTGTAATTCTAGGGAACAGTGTGATTGGAAATTGGATTCTCAATCTCTAGTAGTATCAGATGCTGTGGAATTTGATGATGATATAACATCTTTTGATAATCAAAGACTAAAGGATCCTGAAGTTGTTTGTCGTTCTTATTTGCCAAAGTCAACTGGTTTCCTTCATGTATCAAACCTTTCTAGCCCTTGTCTTCTGCAGCATGGTGAAGGTTGTACTTCCGTGAATGGAGGTTCTGTATCTGTTGATGAATCTATATTACATGCATCTAATATACTATGCAATGACCACCCGGAGAAATTGGTCAGCAGCAGCTCGTATGGTCTGCTTAATGATGAAAGAAATGGACATAGCATTCAAAGATTAGTTGAAGCAGTAAATGCTGGACATGATGTTACTATGGATAAGGGTGAAAGTAGTATAATTTCTAATATTTTGTCCATGGATTTTGATGCCTGGGATGACTCACTAACATCACCACATAATTTAGCTAAGTTGTTGGGTGACAATACTGATAACCAGTCTGGTCCTTTAAACATATCTAGTTCTTGGAAAGTTCACAGTAACAATCAATCAAGATTCTCTTTTGCAAGGCAGGAGGAATCCAAAATCCAAATGTTTGATGCACATACATCTTATGGTGTAAACCATCAACGGCCAAATAGTAAAGTATTCCAGAATTTTTCAGAAAGAGACTTGTATATGGATAAGTCGGGCATTGCAAATGGATTTCGTACTAGTAACTTTGAGGAAGCTGAAAATATGGCTAGTGGTCATTTCATTTCATCTAACAAGCTTTCGGCCATTTCAAGAGCACAAGTTTCAGCCCCACCGGGATTTTCCATTCCAAGCAGGCCACCACCACCTGGTTTTTCGTCCAACGAGAGAGTGGAACAGGGTTTTGACTCCATTTCTGGGAATTCTCTACTTGACCATTCTTCCCTTTTGAGAAATTCATATCAGTCACCTTCAGCTGGAAACCTTGGTGGTTCTGGGGATATTGAATATATGGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCGGCACTGGACATTCGATCCAATTTTATGCCACAGTTAAATTACTTTGAAAATGATGCCAGACTTCAATTATTGATGCAAAGATCTCTGTCACCACAGCAAAACCATAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGTGATTCTTATGCTGTTTCTTCAAGGTTAGATCAGTCACAAGTCAGTAATCTGGGTCCATTCCAACAGCTGTCTATGCAGCAGTCTGCAAATGCAGTCTTGTCAAATGGGCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAATGGTTTGGGTGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGGTTCAATAAATTTTATTCAGGATATGATGATTCAAAATTTCGGATGCCAAATTCTGGGGATCTCTACAACAGAACATTTGGGATGTGA 3048 0.4104 MSDKGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGMAANCERLVNEVNMEKKMKTQKSKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRSVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRLGNVLPPPLDDNMNTTSPKPIVKNPSNNSVSTVRGSPPNGIYERHIPLPASAAWGTQATNCQPPAGGLSYPNGPSKPKSDTGSSSLAFSAAVTGSIQASDVTKRPPSSDGSHSMTTRVKNELLKPVKQYNNSADGLVSAGEKSPSSDVSPVPVNLNSQLSSLPLSRDSDGNCTTANTINSTNMTGQSCNSGPEETMPATNEEIPNLSIELSSINIDGNAEHCSITKPNSPPTDYVLIKSPEIQGSQYNDRFRDVITTNVAGIATPDNEVCNSREQCDWKLDSQSLVVSDAVEFDDDITSFDNQRLKDPEVVCRSYLPKSTGFLHVSNLSSPCLLQHGEGCTSVNGGSVSVDESILHASNILCNDHPEKLVSSSSYGLLNDERNGHSIQRLVEAVNAGHDVTMDKGESSIISNILSMDFDAWDDSLTSPHNLAKLLGDNTDNQSGPLNISSSWKVHSNNQSRFSFARQEESKIQMFDAHTSYGVNHQRPNSKVFQNFSERDLYMDKSGIANGFRTSNFEEAENMASGHFISSNKLSAISRAQVSAPPGFSIPSRPPPPGFSSNERVEQGFDSISGNSLLDHSSLLRNSYQSPSAGNLGGSGDIEYMDPAILAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLSPQQNHRFSEIGNTFSQLGDSYAVSSRLDQSQVSNLGPFQQLSMQQSANAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01084 1015 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 111 192 - -
Phac11g01084 1015 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Phac11g01084 1015 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Phac11g01084 1015 SMART rrm2_1 111 192 IPR003954 GO:0003676
Phac11g01084 1015 CDD RRM_CNOT4 105 204 IPR034261 -
Phac11g01084 1015 MobiDBLite consensus disorder prediction 798 819 - -
Phac11g01084 1015 MobiDBLite consensus disorder prediction 252 295 - -
Phac11g01084 1015 MobiDBLite consensus disorder prediction 262 289 - -
Phac11g01084 1015 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Phac11g01084 1015 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 1 77 - -
Phac11g01084 1015 SMART rrm1_1 111 192 IPR000504 GO:0003723
Phac11g01084 1015 MobiDBLite consensus disorder prediction 327 369 - -
Phac11g01084 1015 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Phac11g01084 1015 MobiDBLite consensus disorder prediction 309 369 - -
Phac11g01084 1015 SUPERFAMILY RING/U-box 3 66 - -
Phac11g01084 1015 CDD mRING-HC-C4C4_CNOT4 8 58 IPR039515 -
Phac11g01084 1015 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Phac11g01084 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Phac11g01084 1015 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1009 IPR039780 GO:0004842|GO:0030014
Phac11g01084 1015 Gene3D - 111 192 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01084 Phac-Chr11 7235180 7243626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01084 K10643 - gmx:100801880 1781.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02080 5 40523719 40535915 Phac11g01084 11 7235180 7243626 PCT