Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00943 ATGTTGTCTGAATTGGAAAGAAGACCGATGCTTGGGAGTAACGAGGGTTCTTTTGGAGATGAACTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGCCGACAAGAGGCTGATGATCGTGAGAGAGAGCTTAATATTTTTAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTAAGTGCTGTTGGAGGGTTGTTTGGTGGTGGTGCTGTTGCCGGTGCTGGTGGTGGTGATGCTGGTGCCTTTTCGGAGTTTCATGGGACTGCGGATGTGAATGGGATTGCTTCCGAGGAGGAACTAAGGTCTGATCCAGCTTATCTTTCATACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAAAGGTGGTGTTTCAGTTCTGGGTGGAATTGGAGATAGGAGGAAAGTGAACAGGGCTGACGATATTGGTGGTAGATCCTTCTTTTCTACTCCACCGGGTTTTAACATGAGGAAACAAGAGAGTGAAGTGGATAATGAAAAAACAAGAAGTGCTGCGGAGTGGGGTGGTGATGGACTGATTGGTTTGCCCGGAATAGGGCTGAGCAAACAGAAGAGTTTTGCAGAAATTTTCCAGGATGATTTGGTACGTAATACCTCTGTCACAGGCCCTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGACAATGATATCATTAGTCCTGCTGAAGCAGAGTTAGCTCATGTGCGCCGTGAGTCCACAACAACTGATGCACTGAGGTCAGGATCAAATATTCAAGGATCATCTGTATCCCAAAATACTGGCTTGCCAGCTTCATATTCTTATGCTGCTGCGGTTGGATCTTCCTTGTCAAGAAGCACTACTCCTGATCCACAGCTTGTTGCTAGGGCTCCCAGTCCTTGCATCACACCTATTGGTGGTGGCAGAGCTACACCTTCTGACAAGAGAATTATTGCGAGTCCAGATGGATTTAATAGTGTTTCATCTGGCATCAATGAGTCAGCAGATCTTGTGGCAGCATTGTCAGTGATGAACTTGTCTGCAGATGACATATTAGATAGTGATAACCGTTTGCCATCACAGGTTGAATCAGATGTTGATAATCACCAGAGATATCATTTTGGTAGGCAAGGTGGTCAAGATCACGGGAAGCAACATGCTTATTTAAAGAAATCTGAATCAGCTCACTTGCAAAATTCAAGTAAGAGCAGGGACGGTTCTGATCTTAGCAATGCATCCTTGGATAGGCAGGTTGAGCTACAAAATTCTAATGTTCCTTCCAATAATCCATATTTCAAAGCATCACCTACCTCCCATTTTATTAGAGGAGGTAATTTCCCACCTCAGTACCAGCCTATAGATGGTTCAAATTCATCGTATACTAACTATGATCTGAGTGGGTACACCGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCACCCTTGTTTGAAAATGTCGCTGCAGCATCTGCAATCGCAGCCCCTGGAATGGATTCAAGAATTCTTGGAGGTGGTTTGGCATCTCGAGCTGCTGCTCCATCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTCCGGGTAGTGCTCTTCAGGCCCCTTTTGTTGATCCTATGTATCTTCAGTACCTGAGGACATCTGAGTATGCAGCACAACTTGGTGCTCTTAGTGACCCCTCTGTCGACAGGAACTACTTGGGCAATTCATACATGAGTTTACTTGAGCTCCAGAAAGCTTATCTTGGGTCTATCCTCTCACCTCAGAAATCTCAATACAATGTACCACTGGGTGGTAAATCAGGCAGCTCCACTCCTCATAATTATTATGGAAATCCTGCTTATGGTGTTGGGCTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCACCACCCCTGTAGGATCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATGTAGATACTGGGAACATTGATGAAAGCTTTGCTTCTTCTCTGTTGGAGGAGTTTAAAGGCAATAAAACAAAGTGTTTTGAGCTTTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACGGCCACTACAGAAGAAAAGAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCAGCCCAGAGAAGAGAGTTGGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGGGTCATCCAGAAGGCCATCGAAGTTGTTGATCTAGATCAGAAGATAGAGATGGTGCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAAAACGGTAATCATGTCATTCAGAAATGTATTGAATGTGTCCCTGAAGATGCAATCAATTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACCCTCTCAACCCATCCATATGGTTGCCGGGTTATACAGAGAGTTCTGGAACATTGCGAAGATCTCACAACACAGCAAAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGGAACTACGTTGTACAGCATGTTCTAGAGCATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATTGTTCAAATGAGTCAACAGAAGTTTGCGTCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTCTTGAGCGCCAATTACTAGTGCATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAGTTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACATGTGATGATCAGCAGCGTGAACTGATTCTTTCACGAATTAAGGTTCATTTAAATGCATTGAAGAAGTACACCTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGTCTCCCCAACCTGCTTAG 3153 0.4408 MLSELERRPMLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGGAVAGAGGGDAGAFSEFHGTADVNGIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGVSVLGGIGDRRKVNRADDIGGRSFFSTPPGFNMRKQESEVDNEKTRSAAEWGGDGLIGLPGIGLSKQKSFAEIFQDDLVRNTSVTGPPSRPASRNAFDDNDIISPAEAELAHVRRESTTTDALRSGSNIQGSSVSQNTGLPASYSYAAAVGSSLSRSTTPDPQLVARAPSPCITPIGGGRATPSDKRIIASPDGFNSVSSGINESADLVAALSVMNLSADDILDSDNRLPSQVESDVDNHQRYHFGRQGGQDHGKQHAYLKKSESAHLQNSSKSRDGSDLSNASLDRQVELQNSNVPSNNPYFKASPTSHFIRGGNFPPQYQPIDGSNSSYTNYDLSGYTGNPALASLMTNQLGTGNLPPLFENVAAASAIAAPGMDSRILGGGLASRAAAPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEYAAQLGALSDPSVDRNYLGNSYMSLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHNYYGNPAYGVGLSYPGSPMANSVVSTTPVGSGSPVRHNELNMRFASGMRNLAGVMGPWHVDTGNIDESFASSLLEEFKGNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAAQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAINFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCEDLTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPLERQLLVHEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00943 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 787 822 IPR001313 GO:0003723
Phac11g00943 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 823 858 IPR001313 GO:0003723
Phac11g00943 1050 SUPERFAMILY ARM repeat 698 1032 IPR016024 -
Phac11g00943 1050 Pfam Pumilio-family RNA binding repeat 902 933 IPR001313 GO:0003723
Phac11g00943 1050 Pfam Pumilio-family RNA binding repeat 834 857 IPR001313 GO:0003723
Phac11g00943 1050 Pfam Pumilio-family RNA binding repeat 791 824 IPR001313 GO:0003723
Phac11g00943 1050 Pfam Pumilio-family RNA binding repeat 863 898 IPR001313 GO:0003723
Phac11g00943 1050 Pfam Pumilio-family RNA binding repeat 982 1011 IPR001313 GO:0003723
Phac11g00943 1050 Pfam Pumilio-family RNA binding repeat 719 753 IPR001313 GO:0003723
Phac11g00943 1050 Pfam Pumilio-family RNA binding repeat 755 788 IPR001313 GO:0003723
Phac11g00943 1050 Pfam Pumilio-family RNA binding repeat 937 970 IPR001313 GO:0003723
Phac11g00943 1050 CDD Pumilio 711 1031 IPR033712 GO:0003723
Phac11g00943 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 932 967 IPR001313 GO:0003723
Phac11g00943 1050 MobiDBLite consensus disorder prediction 261 277 - -
Phac11g00943 1050 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 108 1034 - -
Phac11g00943 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 859 895 IPR001313 GO:0003723
Phac11g00943 1050 MobiDBLite consensus disorder prediction 1 24 - -
Phac11g00943 1050 MobiDBLite consensus disorder prediction 372 403 - -
Phac11g00943 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 751 786 IPR001313 GO:0003723
Phac11g00943 1050 MobiDBLite consensus disorder prediction 294 326 - -
Phac11g00943 1050 MobiDBLite consensus disorder prediction 404 422 - -
Phac11g00943 1050 Pfam Nucleic acid binding protein NABP 308 714 IPR012940 -
Phac11g00943 1050 MobiDBLite consensus disorder prediction 369 422 - -
Phac11g00943 1050 Gene3D - 695 1041 IPR011989 -
Phac11g00943 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 715 750 IPR001313 GO:0003723
Phac11g00943 1050 FunFam Pumilio homolog 1 isoform 2 694 1041 - -
Phac11g00943 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 968 1009 IPR001313 GO:0003723
Phac11g00943 1050 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 695 1035 IPR033133 GO:0003723
Phac11g00943 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 896 931 IPR001313 GO:0003723
Phac11g00943 1050 SMART pum_5 715 750 IPR001313 GO:0003723
Phac11g00943 1050 SMART pum_5 932 967 IPR001313 GO:0003723
Phac11g00943 1050 SMART pum_5 787 822 IPR001313 GO:0003723
Phac11g00943 1050 SMART pum_5 974 1009 IPR001313 GO:0003723
Phac11g00943 1050 SMART pum_5 751 786 IPR001313 GO:0003723
Phac11g00943 1050 SMART pum_5 823 858 IPR001313 GO:0003723
Phac11g00943 1050 SMART pum_5 859 895 IPR001313 GO:0003723
Phac11g00943 1050 SMART pum_5 896 931 IPR001313 GO:0003723
Phac11g00943 1050 MobiDBLite consensus disorder prediction 257 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00943 Phac-Chr11 6074298 6081795 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00943 K17943 - gmx:100787039 1790.78