Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00909 ATGGTTCCAAATTTTGAGAACTTTTGGTCTGAGTGCCCATGGGAAGAGGATTTGAAGTATGCCAAAGCTGTCTGTGAACAGGTTGATGTACCGTTAGAAGTTGTTCACTTAACTGATGAATACTGGAACAATGTGGTTTCTTATCTCATTGAAGAGTATAGTAGTGGCCGAACTCCCAACCCCGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCTATTGGTGGCATGGGCTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATTTGCTGATGGCATGAATGGGCCTTCTGTTCTTGAACTATCACAAGATATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTAAAGCAACTTCTTTTTCCACTTGGTTGTATTCCCAAGGATGAAGTTCGCAGGCTTGCAACAGAATTTGATTTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGAGAAAGAGAAGGCATCATACTGGAGGCTGAGACAGGGGATTTCCTTGGCAAACATCGAGGATTCTGGTTTTATACTATTGGTCAGCGTCAGGGTCTACGGCTACCTGGAGGTCCATGGTATGTTGTCGAGAAGGATGTTAAAAACAATGTAGTTTTTGTCTCAAGAAATTACTTTTCCTTTGACAAAAGGAGGCGTGTATTCCGTGTTGGTTCTTTTAAATGGCTTAGTGAGCTGCCCCCAGGCCAGACAAGTCAACTTCAATGCAAGGTGAGACATGGTCCTGGATTCTATGATTGTAGCTTACAAATGGAAGTGGAAGGAGATGGCCAAGGTCACTCTGGTGTTGTCCGCATATCTGAAGATGATCAAGGTCTAGCAGCTGGGCAGTTTGCGGCCTTTTACGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAATGCTTGGGAATCCAGTAAAAATAAAAGTTAAACCAGATAGCCCGCAAGAAGTATGTGATTCTGCAGAGTTAGCAAGTAAAGCATGA 1143 0.4191 MVPNFENFWSECPWEEDLKYAKAVCEQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPFADGMNGPSVLELSQDMVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRRLATEFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSELPPGQTSQLQCKVRHGPGFYDCSLQMEVEGDGQGHSGVVRISEDDQGLAAGQFAAFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSMLGNPVKIKVKPDSPQEVCDSAELASKA* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00909 380 Gene3D - 180 239 IPR023382 GO:0016783
Phac11g00909 380 Pfam tRNA methyl transferase HUP domain 7 170 - -
Phac11g00909 380 Pfam Aminomethyltransferase beta-barrel domain 247 327 IPR046885 -
Phac11g00909 380 Gene3D HUPs 2 179 IPR014729 -
Phac11g00909 380 PANTHER - 4 370 - -
Phac11g00909 380 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 212 - -
Phac11g00909 380 Pfam tRNA methyl transferase PRC-barrel domain 175 237 IPR046884 -
Phac11g00909 380 CDD tRNA_Me_trans 12 327 IPR004506 GO:0008033|GO:0016740
Phac11g00909 380 Gene3D Translation factors 246 336 - -
Phac11g00909 380 NCBIfam tRNA 2-thiouridine(34) synthase MnmA 11 327 IPR004506 GO:0008033|GO:0016740
Phac11g00909 380 FunFam tRNA-specific 2-thiouridylase MnmA 180 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00909 Phac-Chr11 5854906 5858876 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00909 K21027 - gmx:100785275 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac11g00909 11 5854906 5858876 Phac11g00909 11 5854906 5858876 ECH