Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00596 ATGGGGACTCTGAGATCGATTCTGAAGCATCCAGATGACTTTTACCCGTTGCTGAAGCTCAAAATGGCCGCCAGAAACGCCGAGAAGCAGATCCCGCCGGAGCCGCACTGGGCCTTCTGTTACACTATGCTCCACAAGGTTTCTAGAAGCTTCGCACTCGTCATTCAGCAACTCGGTACCGACCTTCGCAACGCGGTTTGCATATTCTATCTGGTTCTTCGAGCGCTCGACACCGTTGAGGATGACACTAGCATAGCTACAGATGTCAAGGTGCCTATACTGATAGCTTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGATTCATCACGTTTCAACTGCTTTTCTGGAACTTGGAAAGAACTATCAGGAAGCAATTGAGGACATTACAAAAAGAATGGGCGCTGGCATGGCCAAATTTATTTGCAAGGAGGTTGAAACAATTGACGACTATGATGAATATTGTCACTACGTGGCTGGACTTGTTGGGCTGGGTTTATCAAAGCTCTTCCATGCCTCTGGTTCAGAAGATCTGGCTTCTGATTCCCTTTCCAATTCAATGGGCTTGTTTCTTCAGAAAACAAACATCATTCGAGATTATCTAGAAGACATCAATGAAATCCCCAAGTCACGCATGTTCTGGCCACGAGAGATTTGGAGTAAATATGTTAACAAACTCGAGGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTACAATGCTTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATGCCTTAATATACATGTCTGCTTTAAGAGACTCGTCTATATTTCGCTTTTGTGCTATACCCCAGATAATGGCAATTGGAACACTAGCGTTATGTTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGAGAGGTTTAACTGCCAAGGTGATTGACCGAACAAAGACTATGGCTGATGTCTATGGCGCTTTCTTTGATTTTGCTTCTGTGTTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCGACAAAAACATTGAGCAGGCTGGTAGCTATACAGAAAAGTTGCAGAGAATCTGGTCTCTTGAGTAAAAGCAGGAAATCATTCATTGTGAAGAATGAGAATGGATATGGCTCATTTATGATTGTCATACTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCTAACCACCATAATAACTAG 1245 0.4265 MGTLRSILKHPDDFYPLLKLKMAARNAEKQIPPEPHWAFCYTMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHRHIYDRDWHFSCGTKEYKVLMDQIHHVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGSEDLASDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKYEENSVKAVQCLNDMVTNALMHAEDALIYMSALRDSSIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFASVLESKVDKNDPNATKTLSRLVAIQKSCRESGLLSKSRKSFIVKNENGYGSFMIVILVIMVSIIFAYLSANHHNN* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00596 414 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Phac11g00596 414 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Phac11g00596 414 Gene3D Farnesyl Diphosphate Synthase 34 370 IPR008949 -
Phac11g00596 414 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 406 IPR044844 GO:0004311
Phac11g00596 414 SFLD Isoprenoid Synthase Type I 36 325 - -
Phac11g00596 414 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Phac11g00596 414 SFLD Squalene/Phytoene Synthase Like 36 325 IPR002060 GO:0009058
Phac11g00596 414 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Phac11g00596 414 FunFam Squalene synthase 1 34 370 - -
Phac11g00596 414 NCBIfam squalene synthase 36 367 IPR006449 GO:0004310|GO:0008610
Phac11g00596 414 SUPERFAMILY Terpenoid synthases 36 365 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00596 Phac-Chr11 4000205 4006533 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00596 K00801 - gmx:547940 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac11g00596 11 4000205 4006533 Phac11g00596 11 4000205 4006533 ECH