Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00195 ATGCTACTATTTGGGTCATTTACTGAAGATGAAACCCGATCACTGCTGTCAAAGCAGTCTTCTGGGAAGAATGAAAAGTCTGCTGAGAAGAATCAGCTGCAGTTTGGTTCTCTGAATTCTGTTACTGTTGAGTCAAACAACCTGCAAAACTCAACAAAAGTATCAGTTAGTGCTCCGCCCTCTGGTTCTCAGAAGTGTAATGGAGTGAAAAATGTCGGAGATAATTCATCTGAAGTGTCAGGAGCAATTAAAGAGAATGGCAGAATTACCAATTTCTCCCCTAGCCCCATGAGTACTGGTAGTGTAATTGAAGTTGAAGAAAAAAATGTGAACTGTTTTACATTACTTGATGAAGATGGCCCCTCAAACAAGTTTACAAATTTGAGCCTAGGGGATTTTGAGACTGAAAACTTGAAGAATGTTAAAAAAATTGGCAGTGGAGGTGATTCTTCATTGAAGTTCTCCTGTCGAGAGCCCCCAAAGGCACCTAATGGGCATACTGTTCTGCCTGTTAAAGATATACTGCCTCGAGGCCTTATCAACTCTGGGAATCTATGCTTTCTTAATGCTACCGTGCAGGCCCTGTTGTCATGCTCACCTTTTGTTAATCTTTTACAGCAATTAAGAACTCGCAACCTTCCTAAGGTTGGATATCCTACATTGACAGCATTTTCTGAATTCATAGCCCAATTTGACATGCCTAGCACAACTATCATAAGGAAGCAAGATACAGATACGTTTGAGTCTGGGAGGCCATTTTGCCCTGTTATGTTTGAAGGTGTTCTAAAAAATTTTACTCCAGATGTGCCAAATAGCGTTTCAGGAAGGCCAAGGCAAGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTGAAGCTTGAAGGACAATCTTCAAGTCTTAATGGTACCCAATTTTCTTTTGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGACCGAAGAATAAATCTGCTGTAACAAGGACTCAAAGCCTTGCCCCATCAGAATTAAGTTGTATTTTTGGAGGACAACTTCAAAGTATGGTGAAAGCTAAAGGAAATAAACCTTCGGCGACTGTTCAACCATATCTCTTACTCCATCTTGACATCTATCCTGACACTGTACACACTATTGAGGATGCACTTCGCTTGTTTTCTGCATCAGAAGCTCTTGAAGGGTACCGGGCATCACTCACTGCAAAGGCTGGTGTGGTGACTGCAAGAAAATCTGTACAAATAGTGACACTTCCTAAAATAATGATATTGCACCTGATGCGTTTTGGTTACGGAAGCCAGGGAAGCACCAAGTTGCATAAGGCTGTGCACTTTCCTCTTGAGTTGGTATTGGGTCGTGATTTGCTTGTTTCACCATCGACTGAGGGTCGAAAGTATGAACTTGTTGCTACAATTACTCACCATGGAAGGGAGCCTTCAAAGGGGCACTACACAGCTGACGCCCAATACCCCAATGGTCGGTGGCTACGATTTGATGATGCATCTGTCTTTGCTATTGGAACAAATAAGGTGCTGCATGATCAAGCCTATGTCCTTTTCTACAGACAGCTGTGA 1593 0.42 MLLFGSFTEDETRSLLSKQSSGKNEKSAEKNQLQFGSLNSVTVESNNLQNSTKVSVSAPPSGSQKCNGVKNVGDNSSEVSGAIKENGRITNFSPSPMSTGSVIEVEEKNVNCFTLLDEDGPSNKFTNLSLGDFETENLKNVKKIGSGGDSSLKFSCREPPKAPNGHTVLPVKDILPRGLINSGNLCFLNATVQALLSCSPFVNLLQQLRTRNLPKVGYPTLTAFSEFIAQFDMPSTTIIRKQDTDTFESGRPFCPVMFEGVLKNFTPDVPNSVSGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSSLNGTQFSFVSSVEDDEWETVGPKNKSAVTRTQSLAPSELSCIFGGQLQSMVKAKGNKPSATVQPYLLLHLDIYPDTVHTIEDALRLFSASEALEGYRASLTAKAGVVTARKSVQIVTLPKIMILHLMRFGYGSQGSTKLHKAVHFPLELVLGRDLLVSPSTEGRKYELVATITHHGREPSKGHYTADAQYPNGRWLRFDDASVFAIGTNKVLHDQAYVLFYRQL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00195 530 MobiDBLite consensus disorder prediction 1 74 - -
Phac11g00195 530 Pfam Ubiquitin carboxyl-terminal hydrolase 178 527 IPR001394 GO:0004843|GO:0016579
Phac11g00195 530 SUPERFAMILY Cysteine proteinases 170 528 IPR038765 -
Phac11g00195 530 Gene3D Cysteine proteinases 168 529 - -
Phac11g00195 530 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 177 530 IPR028889 -
Phac11g00195 530 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 22 529 - -
Phac11g00195 530 FunFam Ubiquitin carboxyl-terminal hydrolase 168 529 - -
Phac11g00195 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Phac11g00195 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 472 490 IPR018200 GO:0004843|GO:0006511
Phac11g00195 530 MobiDBLite consensus disorder prediction 10 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00195 Phac-Chr11 1228367 1233713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00195 174 530 Miscellaneous Gene Families AT2G24640 28.767 1.90e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00195 K11841 - gmx:100799656 882.478