Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00184 ATGGATGGTTACGAAGCTACAAGAATTGTGTTTGCAAGGATCCAAAACTTGGACCCTGAAAATGCATCCAAAATCATGGGTGTACTTCTTCTTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGCCCAGAAGCACTTGTTCACTCTGTGATTCTCAAAGCTCGCAAGGAGTTAGGTTTGCCTTCGAACTCTCCGCCAACGCCCTCTACTCCACCTTCTCCTTCACCCTTCCTCTCGAGGCAAAGCTCTGCTTCTTCAAGGCTTGGTGCTATCAACCTACCTCCTGCTCTCACCATTCCAAACCCTTCTTCTTCATGGCCTACTGTGTCTGAGCTTCAAACCCCAGATGGTTTGATGAGCCCCAATCATTTGGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTGCCCTTTTATGTCAACGGAGGCTCAGATTCAATTGATGACTTCCAACTTCAGGATCAGCTTTCTTTCCTTAATGATGGTTCTCCTACTAGTACTGCTCTTGCTCACAAGAACAACCCAGATTTGTTTTACCCGACTCACTCAGACTTGTCCTCAAGTCCTACTGGTGTTGCTGACCCTGCTCTCTTTCCTTCCTACGGTTGGGGAGGGTCTCTTCATCGAAGGAGTTGCTCAGTCAATGATGCTTGTTTAGGCTCCGAGGACCCCAACTCCGGGTTGGGATGGAAACCTTGCCTTTACTTTGCAAGAGGGTACTGCAAAAATGGGACAAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCAGATGGTCCTGCTGCAATGGTAGGGTCTCCGAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTCAGATCCAAATCTTCTCAGCAGCACAGATTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCTACTTTTCCATACTCGCCCAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAACGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTCTGAACAGTCCTGGAATGGTAAACCCAGCTTCCCGGCAGATCTACTTGACTTTTCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCGTACCAGCAGAAGCGAATGTTTGGCTTTGTGACCTTTGTTTATCCTGAGACTGTGAAGCTAATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGAAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCCACTGGTCTAGATGCTAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCACGCTCTTGAGTTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAACATGTTCAACCAAAATCTTGTTCTTCCTTCCTTTCACACTAGTTCAGAGGCCCCAAAGGAGACTAGTTCATCTTCTGCTCCAGCTAGTACTGTATCGGTTTCTGCTGGTCAGCAGCCGGTCAACATATCTGTTGTTGGCAAGGAAATGGTGGTCAATGGAGAGAATGGATATAATGAAGGCAATGGGAAGCAGAGCCCTAGTCATGAAGATCGTGAATTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGTGACTTCATGGTTTCCTTCTCCAATGGACCTAATGAGGCCATTGATGCAGATGCCTCAGGTGCATCTGCCAACTCTAAATATGGTACTAGTGCATTACTTCCACCAGCTTCTGCTCTTGACATGGGAACTTTCAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTGGTCATGGAACTATTGGGATGTTAGCAGGCACCGGTGGACCGATTGGCATTTAG 2115 0.4671 MDGYEATRIVFARIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFLSRQSSASSRLGAINLPPALTIPNPSSSWPTVSELQTPDGLMSPNHLVVGSSTSSSSLPFYVNGGSDSIDDFQLQDQLSFLNDGSPTSTALAHKNNPDLFYPTHSDLSSSPTGVADPALFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGPAAMVGSPSKIEMMEQCHELFRSKSSQQHRLAAASQLMASSTFPYSPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEQADLQHALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFNQNLVLPSFHTSSEAPKETSSSSAPASTVSVSAGQQPVNISVVGKEMVVNGENGYNEGNGKQSPSHEDRELQECLEHNLPDSPFASPTKAAGDFMVSFSNGPNEAIDADASGASANSKYGTSALLPPASALDMGTFKSYNCQIPRFSSGHGTIGMLAGTGGPIGI* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00184 704 Gene3D - 223 295 - -
Phac11g00184 704 MobiDBLite consensus disorder prediction 61 87 - -
Phac11g00184 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 254 IPR000571 GO:0046872
Phac11g00184 704 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 369 440 - -
Phac11g00184 704 Gene3D - 309 453 IPR012677 -
Phac11g00184 704 MobiDBLite consensus disorder prediction 524 572 - -
Phac11g00184 704 ProSiteProfiles Zinc finger C3H1-type profile. 229 256 IPR000571 GO:0046872
Phac11g00184 704 SUPERFAMILY RNA-binding domain, RBD 374 448 IPR035979 GO:0003676
Phac11g00184 704 SMART rrm1_1 363 433 IPR000504 GO:0003723
Phac11g00184 704 CDD RRM_AtC3H46_like 364 433 IPR034365 -
Phac11g00184 704 MobiDBLite consensus disorder prediction 589 609 - -
Phac11g00184 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 419 IPR000504 GO:0003723
Phac11g00184 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 362 438 IPR000504 GO:0003723
Phac11g00184 704 SMART c3hfinal6 231 255 IPR000571 GO:0046872
Phac11g00184 704 MobiDBLite consensus disorder prediction 521 572 - -
Phac11g00184 704 SUPERFAMILY CCCH zinc finger 232 254 IPR036855 GO:0046872
Phac11g00184 704 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 629 - -
Phac11g00184 704 MobiDBLite consensus disorder prediction 439 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00184 Phac-Chr11 1145511 1151935 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00184 - - gmx:100801341 1222.99