Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00025 ATGGAGGACATTGAAGATTTGCTGGTCGGAAGCGGAAGCGGAACTCCGCCGGGCTTCCGTTTGCCATTGGCGGCAGCAGTTGGTGTTGGCGTTGGGAGTAAGCGGAATAAACTCTCTTCTTCGCCTTCTCCGGCAATCCCCGGCACTCAGACTATCTACATAAAGACCTTTGGCTGCTCTCACAACCAGAGTGACAGTGAATATATGGCTGGCCAGCTTTCGGCTTTCGGCTATTCGTTGAGTGACAATCCAGACCAAGCAGATCTCTGGCTCATTAACACTTGCACAGTGAAATCCCCCAGTCAATCTGCCATGGATACCATCATAACAAAAGGAAAATCTTCTAATAAACCGCTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGATATTTGAAAGAGCTGGAAGGGATCAGCATAGTTGGAGTCCAGCAAATTGATCGTGTTGTTGAAATTGTAGAGGAGACTTTAAAAGGTCACGAAGTGCGCCTTTTGACCCGTAAGACATTGCCAGCACTTGACCTTCCAAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCCTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTACACAATTGATAGCCTTGTTGGGCGTGTAAAATCTGTCATTTCTGATGGAGTTAAAGAGATATGGCTTAGCAGTGAGGACACTGGAGCATACGGTCGTGACATTGGTGTCAATCTTCCAACTTTGTTGAAAGCCTTAGTGGCAGAACTACCTGCTGATGCAAGCACAATGCTACGTATTGGAATGACCAATCCACCTTATATCCTTGAACACTTGAAAGAGATAGCCGAGATTTTGCGGCACCCATGTGTATACTCTTTTCTCCATGTACCAGTTCAGTCTGGAAGTGATACTGTCTTGAGTGCAATGAATAGGGAATATACTGTGAGTGAGTTCAGGACTGTTGTAGATACTCTAACTGAGCTTGTGCCAGAGATGCAGATTGCCACTGATATAATATGTGGATTTCCGGGTGAAACTGATGAAGATTTTGTGCAGACTGTCAATCTTGTTAAAGATTATAAGTTCCCTCAAGTTCACATTTCACAATTTTATCCTCGACCAGGAACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTTAAGGGAAGAAGCCGAGAGCTGACAAATGTCTTTGAATCCTTCACACCATACTCTGGGATGGAAGGCAAAGTGGAAAGGATTTGGATTACTGACGTTGCATCTGATGGAATTCACTTGGTTGGTCATACGAAAGGATATATACAAGTTCTTGTACTTGCTCCAGACCATATGCTTGGAGCTTCAGCTATGGCTAAGATAACATCTGTGGGAAGGTGGTCTGTCTTTGGGGAAGTAATTGAGACAGTCAACCATGCAAGTGACAATAAAGCTCTAAACAAGTTGGTTCCTGACCGGGACTTGCATTCTCTCTGCGTTAACCCAGCCAAGGCTGGTGGATTCTCAGAAGAGCCAGAATCTTGTGCCTGTGGAAGTGACGTCTGTTGTAGCATCGACAAGGGTGATGTTTCAAGAGGCACTGCAGTGCCACAGAACCAAAGCAATAGAAATTTCTTTGAATGGATTCTAAGGAAGCGGGAGCATCTGCACAAAAAGGTTGAGAGCGAGCTTGCCTCGGGATCTGTTAAAAAGCAGGAAGGAAAGATGAAGAAGTGGGACTTCGTTGATAAGGTTCTTTTGGGTGGAATATCTATCAGCATCTTTACTATAATTGCTCTAGTAGCAGCTCTTGCGTTCAGAGTAATTTGGTCCCAGTAA 1836 0.4472 MEDIEDLLVGSGSGTPPGFRLPLAAAVGVGVGSKRNKLSSSPSPAIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPDQADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRYLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISDGVKEIWLSSEDTGAYGRDIGVNLPTLLKALVAELPADASTMLRIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTVLSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGETDEDFVQTVNLVKDYKFPQVHISQFYPRPGTPAARMKKVPSNVVKGRSRELTNVFESFTPYSGMEGKVERIWITDVASDGIHLVGHTKGYIQVLVLAPDHMLGASAMAKITSVGRWSVFGEVIETVNHASDNKALNKLVPDRDLHSLCVNPAKAGGFSEEPESCACGSDVCCSIDKGDVSRGTAVPQNQSNRNFFEWILRKREHLHKKVESELASGSVKKQEGKMKKWDFVDKVLLGGISISIFTIIALVAALAFRVIWSQ* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00025 611 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase 51 170 - -
Phac11g00025 611 SFLD Radical SAM 150 392 IPR007197 GO:0003824|GO:0051536
Phac11g00025 611 Gene3D - 51 170 IPR038135 -
Phac11g00025 611 SUPERFAMILY Radical SAM enzymes 173 407 - -
Phac11g00025 611 ProSiteProfiles TRAM domain profile. 412 474 IPR002792 -
Phac11g00025 611 NCBIfam tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 52 473 IPR006466 GO:0035598|GO:0035600
Phac11g00025 611 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase isoform X2 183 413 - -
Phac11g00025 611 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 50 158 IPR013848 GO:0035596|GO:0051539
Phac11g00025 611 SMART MiaB 183 403 IPR006638 GO:0003824|GO:0051536
Phac11g00025 611 Gene3D tm_1862 like domain 181 411 IPR023404 -
Phac11g00025 611 CDD Radical_SAM 187 391 - -
Phac11g00025 611 Pfam Radical SAM superfamily 190 362 IPR007197 GO:0003824|GO:0051536
Phac11g00025 611 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 51 468 IPR005839 GO:0006400|GO:0016740|GO:0051539
Phac11g00025 611 ProSitePatterns Methylthiotransferase radical SAM domain signature. 187 207 IPR020612 GO:0051539
Phac11g00025 611 ProSiteProfiles Radical SAM core domain profile. 179 412 IPR007197 GO:0003824|GO:0051536
Phac11g00025 611 PANTHER RADICAL SAM PROTEINS 1 606 - -
Phac11g00025 611 Pfam Uncharacterized protein family UPF0004 52 129 IPR013848 GO:0035596|GO:0051539
Phac11g00025 611 SFLD B12-binding domain containing 150 392 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00025 K15865 - gmx:100798865 1086.25