Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01858 ATGGCTCAGCCGCCCTTCGATCCGTACTACATGTACCAACAAGATGATCGGAGCAACATCAACACGCTCTTCGTGTCGGGGCTCCCGGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTTCGCCGCCGCCCCGGCTTCGACTCTTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTGGCGTTTGCCACGTTTTTCAACCACCAATCGGCAATGGCAGCGCTGCACGCCTTGAATGGTGTGAAATTTGATCCTCAAACAGGATCTGTTTTGCATATTGAACTAGCCAGGTCAAACTCTAGGAGAAAGCGAAAACCAGGCAGTGGAGCCTATGTGGTTATAGATAAAAGGACCAAAGGGGAGCTTGATGTTCATGGATCATCAAGTGATGATGGTGACAGTGACCCCGATGAACCATCAGACAGTGACGGCAACCATGGTGATTTATCAATCATAGCAAGTGATGAGACGGCTGTTGGTTCTGACAATCATATACCCGTGGAGCAACATGAAAAGGGCAGTGCCGGAGGACTGTGTTCCACTCTCTTTATCGCAAATCTTGGCCCAAACTGCACTGAAGATGAATTAAAACAGGCCTTTTCTGCATATGCTGGATTCAACATGGTCAAAATGCGCTCTAGAGGAGGAATGCCAGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCGTGGAGGAGCTTCAGGGAAGTTTGCTTCCATCATCAGATCGGGGTGGCATGCATATAGAATACGCAAGGTCTAAAATGAGGAAGCATTAG 795 0.4931 MAQPPFDPYYMYQQDDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGSGAYVVIDKRTKGELDVHGSSSDDGDSDPDEPSDSDGNHGDLSIIASDETAVGSDNHIPVEQHEKGSAGGLCSTLFIANLGPNCTEDELKQAFSAYAGFNMVKMRSRGGMPVAFADFEEIDQAAKVVEELQGSLLPSSDRGGMHIEYARSKMRKH* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01858 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Phac10g01858 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 139 260 - -
Phac10g01858 264 FunFam RNA-binding protein with multiple splicing 174 264 - -
Phac10g01858 264 Gene3D - 180 264 IPR012677 -
Phac10g01858 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Phac10g01858 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 245 IPR000504 GO:0003723
Phac10g01858 264 MobiDBLite consensus disorder prediction 124 151 - -
Phac10g01858 264 FunFam RNA-binding protein with multiple splicing 2 18 108 - -
Phac10g01858 264 Gene3D - 16 103 IPR012677 -
Phac10g01858 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Phac10g01858 264 SMART rrm1_1 183 255 IPR000504 GO:0003723
Phac10g01858 264 SMART rrm1_1 22 93 IPR000504 GO:0003723
Phac10g01858 264 SUPERFAMILY RNA-binding domain, RBD 21 244 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01858 Phac-Chr10 41044574 41047497 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01858 - - gmx:100783764 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01858 10 41044574 41047497 Phac10g01858 10 41044574 41047497 ECH