Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01788 ATGTTTGGGATCTTAAACAGGGGTCACAAGATAAAGGGCACGGTGGTGTTGATGACGAAGAATGTGTTTGACTTCAATGAATTTGTGTCAACCACTAGGGGTGGAATAGTTGGTGCTGCAGGAGGTCTTTTCGGTGCTGCCACTGACATAGTTGGAGGCATAGTTGACGGTGCCACTGCCATCTTCAGCCGTAACATTGCCATTCAGTTGATCAGTGCAACCAAAACTGATGGGCTTGGAAATGGAAAGGTTGGAAAGCAAACCTTTTTGGAGAAACATCTTCCTTCGTTACCAAATTTGGGAGATAGACAAGATGCATTCAATGTTTATTTTGAATGGGATGAGAATTTTGGAATTCCAGAAGCATTTTACATCAAAAACTTTATGCAATCTGAGTTTTTTCTTGTGAGTCTCACTCTTGAAGACATTCCCAATCATGGAACCATTCACTTTGTTTGCAATTCATGGGTCTACAACGCTAAATGTTACAAAAGGGATCGCATTTTCTTTGTTAATAAGACATATCTTCCAAATGAAACTCCAGCTTCACTGGTAAAGTACAGAAAAGAAGAGTTGGAAAATCTTAGAGGAGATGGAACAGGGGAGCGCAAGGAATATGACAGGATCTATGATTATGATGTTTATAATGATTTGGGCAACCCAGACAAGAACAAGAATTTAGCTCGTACTACTCTTGGAGGGTCTAGTGACTTTCCCTACCCTCGCAGGGGAAGAACTGGTAGAAAATCAACAAGGAAAGACCCTAAGTGTGAGATGCCAACCAGTGACACCTACATTCCAAGAGATGAAAACTTTGGTCATTTGAAGTCAGGAGACTTTCTTACCTATGCAATAAAGTCCTTAACTCAAAATGTGTTACCTACGTTTCAAAAGGCATTTGGTTTCAACAATGAGTTTGATACCTTTGAAGACGTGCGTGGACTCTTTGAAGGTGGACTTTATCTCCCTACAGACGTAATCAGCAAAATTAGCCCCATACCAGTGCTTAAGGAAATCCTCCGCACTGATGGTGAGCAAGTCCTCAAGTTTCCACCACCTCAAGTCATCAGAGTTACTAAGTCTGCATGGATGACTGATGAAGAATTTGGAAGAGAGATGCTTGCTGGTGTTAATCCTTGCCTAATTCAACGCCTTCAAGAGTTCCCTCCAAAAAGCAAGCTAGATGTTACGGTGTATGGTGATCAAACTAGTACAATGACCAAAGAACACTTGGAGATCAACCTTGGTGGACTCACTGTGGAACAGGCACTGCATGGTGACAGATTGTTCATATTAGATCATCATGATGCATTCATACCATATTTGGAAAGGATCAATGACCTTCCCACTGCAAAGTGTTATGCCACAAGAACTATCCTTTTCTTGAAAGATGACAACACATTGAAGCCACTAGCCATTGAATTAAGTTTGCCAAATCCTGGGGGAAAGGGTGTCAATAGTAGAGTAATCTTGCCTGCAGATGGAGGTGCTGAAAGCACAATTTGGCTACTTGCAAAGGCTTATGTTGTTGTAAATGACTCCTGCTACCATCAACTCATGAGCCATTGGTTGAATACTCATGCCGTAATGGAACCGTTTGTGATAGCAACAAACAGACATTTGAGTGTGCTCCACCCTATTTATAAACTTCTGTTGCCTCATTATCGTGACACTATGAATATCAATGCACTTGCACGACAGTCGCTTATCAATGCAGGTGGTGTCATTGAGCGATCATTTTTGCCTGGCGAATTCGCTGTAGAGATGTCCTCAGCAGTTTACAAGAGTTGGGTTTTCACTGATCAAGCCCTTCCAGCAGATCTTATCAAGAGAGGAATGGCAGTTGAGGATCCATCCTCTCCATATGGCCTTCGCCTTGTGGTAGAGGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATACTATCCAGACCTGGGTTAAAGACTATGTCTCCTTGTACTATCCCACAAATGATGCAGTTAAGAAAGACACTGAACTCCAAGCTTGGTGGAAAGAAGCTGTTGAGAAAGGTCACGGTGACTTGAAAGATAAGCCATGGTGGCCAAAGTTGAACACTCCTCAAGATCTGATTCACATTTGCAGCATTATAATATGGATTGCTTCAGCTCTTCATGCAGCTGTGAATTTTGGACAATATCCTTACGGTGGTTTCATCCTAAATCGTCCAACTATAACCAGAAGATTGCTGCCTGAACCAGGAACCAAAGAATATGGTGAGCTCACCAGCAATTATCAAAAGGCTTATTTGAGAACAATTACAGGGAAGGTTGAGGCCATTGTGGACCTTTCAGTGATAGAGATATTGTCAAGACATGCTTCTGATGAGGTCTATCTTGGACAGAGGGACAATCCAAATTGGACTAATAACATAAAAGCACTTCAAGCATTTAAGAGGTTTGGACAAAAGCTGAAGGAAATTGAAGAAAAAATCATGGGGAGGAACAAAGATTCAAGTCTTAGAAACCGTAATGGACCAGTTCAGATGCCCTACACTGTGCTTCTTCCTACCTGTGAAGATGAAGGCCTCACTTTTAGAGGAATTCCCAACAGCATCTCAATCTGA 2589 0.4191 MFGILNRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRNIAIQLISATKTDGLGNGKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEWDENFGIPEAFYIKNFMQSEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKCYKRDRIFFVNKTYLPNETPASLVKYRKEELENLRGDGTGERKEYDRIYDYDVYNDLGNPDKNKNLARTTLGGSSDFPYPRRGRTGRKSTRKDPKCEMPTSDTYIPRDENFGHLKSGDFLTYAIKSLTQNVLPTFQKAFGFNNEFDTFEDVRGLFEGGLYLPTDVISKISPIPVLKEILRTDGEQVLKFPPPQVIRVTKSAWMTDEEFGREMLAGVNPCLIQRLQEFPPKSKLDVTVYGDQTSTMTKEHLEINLGGLTVEQALHGDRLFILDHHDAFIPYLERINDLPTAKCYATRTILFLKDDNTLKPLAIELSLPNPGGKGVNSRVILPADGGAESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVMEPFVIATNRHLSVLHPIYKLLLPHYRDTMNINALARQSLINAGGVIERSFLPGEFAVEMSSAVYKSWVFTDQALPADLIKRGMAVEDPSSPYGLRLVVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKEAVEKGHGDLKDKPWWPKLNTPQDLIHICSIIIWIASALHAAVNFGQYPYGGFILNRPTITRRLLPEPGTKEYGELTSNYQKAYLRTITGKVEAIVDLSVIEILSRHASDEVYLGQRDNPNWTNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVQMPYTVLLPTCEDEGLTFRGIPNSISI* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01788 862 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Phac10g01788 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Phac10g01788 862 SMART LH2_4 9 172 IPR001024 GO:0005515
Phac10g01788 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 862 IPR013819 GO:0016702|GO:0046872
Phac10g01788 862 Pfam PLAT/LH2 domain 81 170 IPR001024 GO:0005515
Phac10g01788 862 Gene3D - 176 275 - -
Phac10g01788 862 PANTHER LIPOXYGENASE 9 862 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phac10g01788 862 ProSiteProfiles PLAT domain profile. 44 171 IPR001024 GO:0005515
Phac10g01788 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 175 IPR036392 GO:0005515
Phac10g01788 862 CDD PLAT_LH2 9 172 IPR042057 -
Phac10g01788 862 Pfam Lipoxygenase 184 844 IPR013819 GO:0016702|GO:0046872
Phac10g01788 862 MobiDBLite consensus disorder prediction 225 264 - -
Phac10g01788 862 Gene3D PLAT/LH2 domain 1 175 - -
Phac10g01788 862 FunFam Lipoxygenase 496 861 - -
Phac10g01788 862 FunFam Lipoxygenase 176 275 - -
Phac10g01788 862 PRINTS Plant lipoxygenase signature 303 324 IPR001246 GO:0016491
Phac10g01788 862 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Phac10g01788 862 PRINTS Plant lipoxygenase signature 348 364 IPR001246 GO:0016491
Phac10g01788 862 PRINTS Plant lipoxygenase signature 454 478 IPR001246 GO:0016491
Phac10g01788 862 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Phac10g01788 862 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Phac10g01788 862 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Phac10g01788 862 PRINTS Plant lipoxygenase signature 387 406 IPR001246 GO:0016491
Phac10g01788 862 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Phac10g01788 862 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Phac10g01788 862 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Phac10g01788 862 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Phac10g01788 862 Gene3D - 362 494 - -
Phac10g01788 862 FunFam Lipoxygenase 362 494 - -
Phac10g01788 862 Gene3D - 495 861 - -
Phac10g01788 862 Gene3D - 276 361 IPR027433 -
Phac10g01788 862 SUPERFAMILY Lipoxigenase 176 862 IPR036226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01788 Phac-Chr10 40522323 40528086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01788 10 862 Acyl Lipid Metabolism Gene Families AT1G55020 55.991 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01788 K15718 - gmx:100127399 1517.29