Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01706 ATGATTTACATTCTTTTCCTCTTCTCTCTTCTTCTAGCATTCACTTCCAATGCTGCTGTGAATGATTTCTGTGTGGCAGACCTAAAGGGTCCAGATAGCCCTTCAGGGTATCAGTGCAAGCCAACTAAAGCAGTGACGGTGGATGACTTTGTGTTCTCTGGCTTAGTAGCTGGAAACACCACAAACACTTTCAATGCTGCATTAACTTCTGCATTTGTTACTGATTTTCCAGGTGTGAATGGTCTTGGTGTATCAGCAGCACGGTTAGACATAGCGAAAGGAGGATCAATCCCAATGCACACACACCCTGCAGCCACTGAACTTTTGATAATGGTGGAAGGTAAAATCACTGCTGGTTTTATGACACCATTTGCAGTTTACACTAAGACACTGAAACCAGGAGATGTTATGGTTTTTCCACAAGGACAATTACATTTTCAAGTGAATTCTGGAAAAGGAAAAGCCACTGCTTTTCTGGCTTTCAGTAGCGCAAACCCTGGAGCACAACTACTTGACCTTCTGCTATTTGGTAACAGCATACCTTCTGACTTGATTGCACAAACTACCTTCCTTGACGTTGACCAAGTCAAGAAGCATATCCAATGCCACATTCCCTCTTCATCTTCTAAACCCATCAACTCATCACAAGAGATCATGATTACCATTCTCATTCTTTTGTTGTGTGCTCTTGTTTCATCCACTTCCCATGCTGCCAATCTGCAAGAATTCTGCGTAGCAGACCCCAAGGGTCCAGATAGCCCTTCTGGGTATCACTGCAAGCCTCCTAACACAGTAACAGCTCAAGACTTTAACCCCACTTTTGGAGATGGCATTTCAATGCCATCCAAAGTCAAAATATTCCCTATCACTGTACTCGAGGCTCCTATTCTGAATGGTCTTGACAGTGCTCTAGGACGTGTAGAGATTGAGAAAGGTGGATCGTTTCCAATGCACACACATGCTGCCAATGAAATGCTAATCATGCTTCGAGGTGAACTGACCGTTGGAATCTTGACAACTACCAAAGCTTATGTCAACAGAGTCAAAGAAGGAGATATTGTAGTTATTCCAGATGGACTGCAGCATTATCTTGTGAATTCTGGTAACGAGAAAGCCGTTGCTTATGCCACTTTTAGTAGCCCTAACCCTCGTATCGATTTTCTTTATCAAATATTATTTGGCAACAACGTCTCTGCCGCCACCATTGCCCAAACCACCTTCCTTGATGAACCCCAAGTGAGGAAGCTCAAGGCTCGTTTCGGTGGCAGCAACTAG 1275 0.4376 MIYILFLFSLLLAFTSNAAVNDFCVADLKGPDSPSGYQCKPTKAVTVDDFVFSGLVAGNTTNTFNAALTSAFVTDFPGVNGLGVSAARLDIAKGGSIPMHTHPAATELLIMVEGKITAGFMTPFAVYTKTLKPGDVMVFPQGQLHFQVNSGKGKATAFLAFSSANPGAQLLDLLLFGNSIPSDLIAQTTFLDVDQVKKHIQCHIPSSSSKPINSSQEIMITILILLLCALVSSTSHAANLQEFCVADPKGPDSPSGYHCKPPNTVTAQDFNPTFGDGISMPSKVKIFPITVLEAPILNGLDSALGRVEIEKGGSFPMHTHAANEMLIMLRGELTVGILTTTKAYVNRVKEGDIVVIPDGLQHYLVNSGNEKAVAYATFSSPNPRIDFLYQILFGNNVSAATIAQTTFLDEPQVRKLKARFGGSN* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01706 424 SUPERFAMILY RmlC-like cupins 22 199 IPR011051 -
Phac10g01706 424 FunFam Auxin-binding protein ABP19a 17 203 - -
Phac10g01706 424 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Phac10g01706 424 PRINTS Germin signature 129 149 IPR001929 GO:0030145
Phac10g01706 424 PRINTS Germin signature 162 177 IPR001929 GO:0030145
Phac10g01706 424 CDD cupin_OxOx 236 420 IPR001929 GO:0030145
Phac10g01706 424 CDD cupin_OxOx 16 198 IPR001929 GO:0030145
Phac10g01706 424 Pfam Cupin 57 196 IPR006045 -
Phac10g01706 424 Pfam Cupin 285 391 IPR006045 -
Phac10g01706 424 SUPERFAMILY RmlC-like cupins 286 422 IPR011051 -
Phac10g01706 424 Gene3D Jelly Rolls 16 203 IPR014710 -
Phac10g01706 424 Gene3D Jelly Rolls 235 424 IPR014710 -
Phac10g01706 424 SMART Cupin_1_3 53 197 IPR006045 -
Phac10g01706 424 SMART Cupin_1_3 270 414 IPR006045 -
Phac10g01706 424 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Phac10g01706 424 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01706 Phac-Chr10 39875192 39883470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01706 238 423 Miscellaneous Gene Families AT1G72610 37.113 9.08e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01706 - - cam:101508818 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01706 10 39875192 39883470 Phac10g01706 10 39875192 39883470 ECH