Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01678 ATGTTGTGGACTTGGTTAGAAACGAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAACTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGAGCTGTATTGTGACATCCCTTTGGGTCTCTATGTGATCCGTGGGGAAAATGTTGTTCTAATTGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCTGAACACATGACTCGTGTTTCTACAGCAGAAATCAAGAGGGCACAGAAAGCTGAAAGGGAGGCCTCAGATCTGAAAGGGACTATGAGGAAAAGAATGGAATTCCTTGACTTTGACTAG 351 0.4444 MLWTWLETKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGELYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFD* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01678 116 Gene3D - 5 114 - -
Phac10g01678 116 PANTHER LSM1 8 110 IPR044642 -
Phac10g01678 116 SUPERFAMILY Sm-like ribonucleoproteins 6 72 IPR010920 -
Phac10g01678 116 SMART Sm3 1 69 IPR001163 -
Phac10g01678 116 FunFam U6 snRNA-associated Sm-like protein LSm1 2 113 - -
Phac10g01678 116 ProSiteProfiles Sm domain profile. 1 73 IPR047575 GO:0003723
Phac10g01678 116 Pfam LSM domain 8 68 IPR001163 -
Phac10g01678 116 CDD LSm1 9 70 IPR034104 GO:0000956
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01678 Phac-Chr10 39647136 39650028 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01678 K12620 - gmx:100306352 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01678 10 39647136 39650028 Phac10g01678 10 39647136 39650028 ECH