Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01582 ATGGTGGTGGCTGCGGGCGCTAAGTTCAATTTGAGAAGAGATAATGGTTCTTCTCATAATGGTATCAACGGTTATAGCAGTGATGGAGAACTTTCCAGAATTAGTAAGAGTGGCTGTTTTTCATCAGTGACAGAGGTGGAGAGAGACCCTTCTTGCGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGATCCACAGAACCAAGGCCTACGAGAAAGTGACTTCAAATCATTCTGGTTGTCCAGGAATGAGAGGATTCTTGATTGCTTGCTTTCTGAATCATCTTCTATTATGTGCCTCCAGGAATTCTGGGTTGGAAATGAAGAGCTTGTTCACATGTATGAGGAGAGACTTGGAGATGCTGGCTACAATCTCTTCAAGCTTGGTCGAACCAACAACCGTGGAGATGGTCTACTGACTGCTATACATAAAGAATGTCTAAGAGTTGTTGATTATCGAGAGTTGCTTTTGAACGATTGTGGCGATCGTGTTGCTCAATTGCTACACGTTCAGTCAGTTGCCCCCTCACAAAAAGGCAGTGTTCCCCACGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCACGATTCAAGTCTCTGTGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTACCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGCAGCAAGCGTGGGCATGTTTACAAGTTCCTTAGGTCACAAGGGTTTGTTTCATCGTATGATACTGCTAATCAATGCAGTGACAGTTATGCAGATGCTCACAAGTGGGTTAGTCACCGAAATCATAGAGGAAATATCTGTGGAGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTGAAAACCAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTGCGAAAAGCATCAATGTCTGAAAATGATGCATTTGCCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACATATTTTAGTTTCTCCGAAGCACTTCGGCAGGTAAAGTTGATTGGTGTGCCTTATGGACTTTGTTTTCAACAACTACAAGATCTATGGAATCAAGTAGATGTTGATGGAAATGGTGTTATCGACTTTGAAGAGTTCAAGAAGATTTGGAATTCAGCATGTCCAGATCATGTGTTGGAAAACTTGAATGGGTGCATGGAAGATGTTAACACAGAATTGGAGCAGCAAGAAGCCATTGGTTTTATGATAAAGAATGCAATGCTGTATCCGCGTGAAGTGGAAAAAGGACTATGGCCAGAAGATTATTCTCTCTCTGATCATGCTAGACTCACAGCTGTGTTTTCGCCAGCAAGGATGAAATGTTCTGGCACACAAAACTGA 1413 0.4197 MVVAAGAKFNLRRDNGSSHNGINGYSSDGELSRISKSGCFSSVTEVERDPSCVSFTTFNILAPIYKRIDPQNQGLRESDFKSFWLSRNERILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYNLFKLGRTNNRGDGLLTAIHKECLRVVDYRELLLNDCGDRVAQLLHVQSVAPSQKGSVPHEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTANQCSDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASMSENDAFAFLKGDNYADSVTYFSFSEALRQVKLIGVPYGLCFQQLQDLWNQVDVDGNGVIDFEEFKKIWNSACPDHVLENLNGCMEDVNTELEQQEAIGFMIKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSPARMKCSGTQN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01582 470 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Phac10g01582 470 Gene3D Endonuclease/exonuclease/phosphatase 38 330 IPR036691 -
Phac10g01582 470 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 39 458 - -
Phac10g01582 470 Gene3D - 335 423 - -
Phac10g01582 470 FunFam Putative calcium-binding protein 37 462 - -
Phac10g01582 470 Coils Coil 403 423 - -
Phac10g01582 470 Pfam EF hand 370 396 IPR002048 GO:0005509
Phac10g01582 470 SUPERFAMILY EF-hand 347 394 IPR011992 -
Phac10g01582 470 SUPERFAMILY DNase I-like 46 267 IPR036691 -
Phac10g01582 470 Pfam Endonuclease/Exonuclease/phosphatase family 87 282 IPR005135 GO:0003824
Phac10g01582 470 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Phac10g01582 470 SMART efh_1 369 397 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01582 Phac-Chr10 38952690 38956705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01582 29 359 EF-hand Containing Proteins AT5G54130 67.372 1.90e-164 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01582 - - gmx:100788191 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01582 10 38952690 38956705 Phac10g01582 10 38952690 38956705 ECH