Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01543 ATGGAGCTTGACATCCGTTCACTCCTCAACTCCGCCACCTCCGTCACCTCCGGTTCCTCCTCCGACACTGACGACGACGCTCCCCACCGCACCATCGATGATATTCTCAACGACTGTGACACTTCATCTTCCTCAACCTCTCCACCTTCCTCTCCATCTCACTCCCTCTCTTCACTCCCCAATTCCCATCCTCAAAACCCCACTCTTCAACCAAAACCACTCCAACCCGCACTCGATTCAATTTCTCGGTTCAAACCAGCCGAATTCGCTGACCGCACACGCGTTTCGCGCCCGTTCTCTTCTCTATTACAAGGCGTGCGGTCCAATGCGAAGCCGGGCGCCGCGCTCGCGGCGGCTGCAGCGGCGTCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATCATTTCCAGGAGGAAATCTGCGGCAGCAATCAGCACCGACTTGAGTTCGATCGTTGCCGCCGGCGACGATTATTCCGATGTTTCTTCCAAAGGCGAATTGGGCGAGCCTAGCGAGAAATTCGATCCTGTGCCGCGGAAAATCGAGACTCACTCTGGTGAAAGTGCTTCTGTTAACAGCGAACGTGTTGACAGTGATGCAGAAATTGCCAATGATTTGAAGGCTGGTAGTGCCGCTGACAATCAGGTGCATAGTGATACTGATAATGACAATGGTGATGGTGATGGAAATGGCTATTATAATGATTCTTCTATAGTGAGTGAGGAGAATAGGAATTTAGATGAGGTTGATGGTGATCATGGGAAGGATTTTAATTCTGCACCGTTTGATGAAGACAATGATGATTGTGACTTGGATGGGAATGATGGTGCTGATGGGAGAATCACAGCTACGGATTCTGCTGTGGAAACAGAAGAAACGGTGAATAATGGTGGCAGTACTGTGGAAAATGTTAAGAATGAGATGAGTGGCGGCGGTAGTGACGAGGGTAGTTCATTGGGTGATGTTTCAGAGCTAGTGGAAGAAAGGCTTGAGGAATTGGAAAGCAGAAGAGCTGCTAAGAGAGCAGAGAAGAAACGAGAGTCTTCAATGAAACCACTTGAATTGGCTGAAGAACTGGAGAAGAAGCGAGCTTCAACTGGTTTGCATCTGGAAGAGGGTGCTGCTGCCCAGCCAATGAGACTCGAGGGCGTTCGAAGAGGGTCGACGACTTTAGGATACTTTGATGTTGATGCTGATAATGCAGTCACCAGGGCAATTTCGTCCCAAACATTCAGGCGTGAGCAAGGCTCTGGTCGAGCCTTGGCAGTTCATGCTAATTATATTGCAGTAGGAATGTCAAAAGGGCTCATTGTTGTCTTTCCCAGTAAATATTCCATTCATCATGCTGACAACTCTGATGGAAAGATGTTGATGCTTGCTGTGCAAGGTGATCGGTTGCGTGCTCCAGTGACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGTCATCTAATCCTGTGGGATGTACAGAAAGGGGTTGTGGCAAAAGTTATTAGTGGTGAGCATACAGCCCCGGTAGTACATACCTTATTTTTGGGACAAGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTGCACATTATCTCAGTTGTTCCTTTGTTTAGTAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGGCAAAGTACAGGCCTGGTGCTTTCGGCTTCACCACTCCTTTTCGATGACTTCAGTGGAAGTGCTTCTCCTTTTTCTCAGGGAAACACCTCAGCCCCAGCCAGCAGTATAAGCAGCATGATGGGTGTTGTTGGCGGAGATGCAGGTTGGAAACTCTTCAATGAATCGTCTTCTTTGGTGGAAGAAGGTGTGGTTGTATTTGTAACCCATCAAACTGCATTGGTGGTACGTCTGACCCCTACATTGCAAGTCTATGCTCAACTCTCTAGGCCAGACGGGGTTCGGGAGGGGTCTATGCCGTATACTGCATGGAAATACATGACACAAACACATAGTTCTACTGAAAATATGTCTGCAGAAGCTATTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGTAAGGTTCTGGTTGCAAAGTTGGTCAAATCAGAACTAAAAGTATATGGAAGATGGTCTCTCGAAGGTGCGGCTATAGGTCTAGCGTGGTTGGATGATCAGATGCTGGAAGTTCAAACTTCAAGTGGACAACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTATTTCTGTAGATGGCATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCAACAATGTATTTGGAAATCCTGAGAAAGCTTATCATAACTCTGTTGCTGTAAGAGGAGCTTCTATTTATATACTTGGTCCAACACATCTTCTTATTTCTCGTCTTCTACCTTGGAAAGAGCGTATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTATGATGGCCATGCTCACGGGGTTATTGACCTTCCTAGAACCTTGGATGCCGTACATGAGGCCATAATGCCCTTCTTGGTGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCATTCTGCAATCAAATTGGTAAAGTGGACCAATCCAATGATTCAAATAGTAGAAGCAATTCAGTGCATTGTGAGATAAAGGAGCAATACACCCGTGTTGGTGGGGTTGCTGTTGAATTTTGTTGTCATATCAAACGGATGGACATTCTTTTTGATGAAATTTTCTCCAAGTTCGTTGGTGTTCAACAGCGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAAGATATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGTACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTCCTTCATATGGATATATCATCCTTGGATTTTAATCAGGTTGTCAGATTATGCCGGGAGCATGGACTTTATAGTGCCCTGGTGTATGTCTTCAATAAAGGATTAGATGATTTTAGGGCACCTCTGGAGGAGCTGTTTGCTGTATTGCAAAATAGCCAAAAGGAAAGTGCTACAGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCGTTTCCACCAGGCCGTGGAACTATTCCTCCCACACGCTTACCTTCTCTTAGAAGAGAACTTGTGGAGTTTTTGTTAAAGGACTCCTGTACTTCGAAATCTCAGACAACTTCAGACTTTGTGTCCAGAGGACCCCACTCAAATCTTTATCTTCTCTTAAAGTTAGACACTGAAGCTACGTTAGATGTTCTCAGATGTGCTTTTATGGAAGATGAAATTTCAAATGCCTGCTCATCTTCACCAGATTCAACCAATAAATCTTTAGAGGAAGCAAAAAAAGAAGATAATGCTATTGAAACTCAAGATGCTTTGGTTCAGAACACAATTGATGCTCTCATTCAAATAATTGATATGAATATTGTTCAGAATGATACAACCTTTAGTTGTTGTGAAGATGGGTTGATAGAAGAGTGGCCTTCCAAGGACATAGGTTATCTATTTGAGTTCATTGCATATTATGTTGCTCTCCAAAGATCTAAAATTTCAAAGGGTGTGCTATGTCAAATATTGGAATATTTGACATCTGGTAGTCACTTGTCTACCAATATTTCTGTTCATGGTCCAACTCCAAAAAATAGAGAGAAGCAAGTACTAGCACTTTTGGAAGTACTTCCTAAGTCAGACTGGGATCCTTCATTTGTGCTAGATTTATGTGAAAGAGCCAAATATCATCAGGTTTGTGGATTGATCCATAGTTTCAGACATGAATATGTGGCTGCATTGGATAGTTATATGAAAGATGTAGATGAGCCTATTCATACCTTCTCCTTTATTAATAAAGCATTGTCACAGTTGACTGACAATGACCTTGTAGCATTTCGATCAGCAGTCATACTGCGAATTCCTGCATTGGTTGAACTTAGCAGGGAGGGTGCATTCCATGTGGTTATCAGTCATTTTAGCGAAGAAAGTTCCCATATCATTACTGAACTTCACTCTCATCCAAGAAGCCTTTTTCTTTATTTAAAGACACTCATTGAGCTTCACTTATTTGGCACCCTAGACTTGTCTAATTTGAGAAAGGATGACACTATGAATCCCCTTAACGGAAGGCAGGTTAAGGATCACCCTGAAGGAGTCAGAGATTACTTAGAGAATATATCCAATTTCCCCAAGTACATGCGGGAAAAACCAATTCATGTGCCTGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCCGATACGAAGGTCATTCAGTTCTGAAGTTTCTGGAAATGTTTGATAGCTATAGAGTGGAACATTGTTTACGTCTCTGTCAACAATATGGCATTATAGATGCAACTGCATTCTTATTAGAAAGGGTTGGCGATGTTGGTAAAGCTCTTTCACTTACACTTTCTGATCTAAATAATAAATTCGTTGAGCTTGATGCTGCTGTGGAAGCTGTAGTTTTAAACCATCGCAGAGTTGGTTCTTCCCGTGTGGAAGTATTCGACACTATTTTAAGAACAAAGGAGGGAAGTGACATCCACAATTTATTGCGTGCCTGTATTGGTCTGTGTCAACGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAAGCACATTGGTTTAAATTACTTGACTCGTTTTGTGACCCATTGGTCGATTCAAATGATGGAGCATATGAAAGTGAAAATGATTTTGGAGTGCTAGCTGGATTGGCAGATTCACAACAGGACAAGGACACCTATAAAAGCAGCTGGAAAATTTCAAAGTCCCGAAATGGTCATATATTGAGAAAATTGCTATCCCAGTTCATTAAAGAGATTGTAGAGGGAATGATTGGTTTTGTTCACCTTCCGACAATCATGTCTAAACTTCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTTACAATATTGGGAATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCGTTAATAGAAGATGATTCGTTTTATACAATGAGTTTACTCAAGAAAGGGGCCTCCCATGGATATGCTCCCAGGAGTCTCGTGTGCTGTATTTGTAATTGCCTTCTTACAAAGAACTCTGGTAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAATTCATCTCCAATGTGAAGTTTCGGAAAATGAGGCACCAAGCAAAGGATCTTCGTCGGGATGCCCTCTATGCATGCCTAACAACAAATTCCAGCAGTCCCGAAACAAATCAATCTTTGCAATGAATGGCTTGGTCAATAAATTCTCATCAAGGCGCCAGTACCCCCATGGAAGTACCATCCATCCTCGTGACAGTGATTTGACAGAGAATATGTATGGACAACAACATATATCACGGTTTGAGATCTTGAGCAACCTGCAGAAAAATCAGAGATTTATGCAAATAGAAAACTTGCCTCAGTTGAAGCTTGCCCCGCCTGCTGTGTACCATGAAAAGGTAAGTAAAGTTGCAAACTTTCTTACCGGCGAAAGTAGCAATAATTCTTCTGCTATTGAGAAACAAAGTCGAAACAAGCAAAACCGGGAGCTAAGAGTTAAGGGTTCATCAATTAGATTTCCTTTGAAATCAAGTATATTTGGTGAGTAA 5730 0.4276 MELDIRSLLNSATSVTSGSSSDTDDDAPHRTIDDILNDCDTSSSSTSPPSSPSHSLSSLPNSHPQNPTLQPKPLQPALDSISRFKPAEFADRTRVSRPFSSLLQGVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKSAAAISTDLSSIVAAGDDYSDVSSKGELGEPSEKFDPVPRKIETHSGESASVNSERVDSDAEIANDLKAGSAADNQVHSDTDNDNGDGDGNGYYNDSSIVSEENRNLDEVDGDHGKDFNSAPFDEDNDDCDLDGNDGADGRITATDSAVETEETVNNGGSTVENVKNEMSGGGSDEGSSLGDVSELVEERLEELESRRAAKRAEKKRESSMKPLELAEELEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRAISSQTFRREQGSGRALAVHANYIAVGMSKGLIVVFPSKYSIHHADNSDGKMLMLAVQGDRLRAPVTSMSFNQQGDLLLAGYGDGHLILWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLLHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFSQGNTSAPASSISSMMGVVGGDAGWKLFNESSSLVEEGVVVFVTHQTALVVRLTPTLQVYAQLSRPDGVREGSMPYTAWKYMTQTHSSTENMSAEAIERVSLLAIAWERKVLVAKLVKSELKVYGRWSLEGAAIGLAWLDDQMLEVQTSSGQLYLFSKDGTVIHQTSISVDGIGGDDLVSYHTHFNNVFGNPEKAYHNSVAVRGASIYILGPTHLLISRLLPWKERISVLRKAGDWMGALNMAMTLYDGHAHGVIDLPRTLDAVHEAIMPFLVELLTSYVDEVFSYISVAFCNQIGKVDQSNDSNSRSNSVHCEIKEQYTRVGGVAVEFCCHIKRMDILFDEIFSKFVGVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFAVLQNSQKESATALGYRMLVYLKYCFTGLPFPPGRGTIPPTRLPSLRRELVEFLLKDSCTSKSQTTSDFVSRGPHSNLYLLLKLDTEATLDVLRCAFMEDEISNACSSSPDSTNKSLEEAKKEDNAIETQDALVQNTIDALIQIIDMNIVQNDTTFSCCEDGLIEEWPSKDIGYLFEFIAYYVALQRSKISKGVLCQILEYLTSGSHLSTNISVHGPTPKNREKQVLALLEVLPKSDWDPSFVLDLCERAKYHQVCGLIHSFRHEYVAALDSYMKDVDEPIHTFSFINKALSQLTDNDLVAFRSAVILRIPALVELSREGAFHVVISHFSEESSHIITELHSHPRSLFLYLKTLIELHLFGTLDLSNLRKDDTMNPLNGRQVKDHPEGVRDYLENISNFPKYMREKPIHVPDDLIELYLELLCRYEGHSVLKFLEMFDSYRVEHCLRLCQQYGIIDATAFLLERVGDVGKALSLTLSDLNNKFVELDAAVEAVVLNHRRVGSSRVEVFDTILRTKEGSDIHNLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLVDSNDGAYESENDFGVLAGLADSQQDKDTYKSSWKISKSRNGHILRKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLVCCICNCLLTKNSGSSGIRIFNCGHAIHLQCEVSENEAPSKGSSSGCPLCMPNNKFQQSRNKSIFAMNGLVNKFSSRRQYPHGSTIHPRDSDLTENMYGQQHISRFEILSNLQKNQRFMQIENLPQLKLAPPAVYHEKVSKVANFLTGESSNNSSAIEKQSRNKQNRELRVKGSSIRFPLKSSIFGE* 1910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01543 1909 ProSitePatterns Trp-Asp (WD) repeats signature. 482 496 IPR019775 -
Phac10g01543 1909 MobiDBLite consensus disorder prediction 155 327 - -
Phac10g01543 1909 CDD RING-H2 1724 1773 - -
Phac10g01543 1909 PANTHER VACUOLAR PROTEIN SORTING VPS41 244 1845 IPR045111 GO:0006623
Phac10g01543 1909 MobiDBLite consensus disorder prediction 7 22 - -
Phac10g01543 1909 MobiDBLite consensus disorder prediction 241 262 - -
Phac10g01543 1909 SUPERFAMILY WD40 repeat-like 410 538 IPR036322 GO:0005515
Phac10g01543 1909 ProSiteProfiles Zinc finger RING-type profile. 1724 1772 IPR001841 -
Phac10g01543 1909 MobiDBLite consensus disorder prediction 286 313 - -
Phac10g01543 1909 MobiDBLite consensus disorder prediction 37 65 - -
Phac10g01543 1909 MobiDBLite consensus disorder prediction 162 182 - -
Phac10g01543 1909 Pfam Golgi CORVET complex core vacuolar protein 8 943 1127 IPR025941 -
Phac10g01543 1909 SUPERFAMILY RING/U-box 1717 1775 - -
Phac10g01543 1909 Coils Coil 323 350 - -
Phac10g01543 1909 MobiDBLite consensus disorder prediction 1 80 - -
Phac10g01543 1909 MobiDBLite consensus disorder prediction 225 240 - -
Phac10g01543 1909 Gene3D - 385 544 IPR015943 GO:0005515
Phac10g01543 1909 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 504 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01543 Phac-Chr10 38653108 38665015 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01543 K20178 - gmx:100780869 3088.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01543 10 38653108 38665015 Phac10g01543 10 38653108 38665015 ECH