Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01497 ATGAGGCAAGTAAAGCAAATCCATGGTTACACTCTAAGAAATGGCATAGACAACACCAAAATCCTCATTGAGAAGTTACTTGAAATCCCAAACCTTCACTATGCACACATGGTGTTGCATCATTCCCCAAAGCCAAACCTTTTTCTCTACAATAAGCTCATTCAAGCCTACTCCTCCCATCCCCAACAACAGCACCGATGCTTCTCCCTTTACTACCAAATGCGCCTTCATGGCTTCTTACCAAACCAACACACTTTCAACTTCCTCTTCTCTGCATGTACTTCCCTCTTTTCCCATTCCCTTGGCCAAATGCTCCATACCCATTTCATCAAATCAGGCTTTGAACCTGACCTCTTTGCAGCCACTGCTTTGCTTGATATGTATTGCAAAGTGGGCACGTTGGGACTTGCACGCCAATTGTTTGATGAAATGCCAGTGAGAGGGGTACCCACATGGAATGCTATCATGTCTGGGTATGCAAAATTTGGTGATATGGAGGGGGCGTTAGAGTTGTTTGGATTGATGCCTACTAGGAATTTGGTGTCATGGACCACCATGATATCTGGTTACTCGCGAAATAAACGGTTTGGTGAGGCTTTGGGGTTGTTCCTGAAGATGGAGCAGGAGAAAGGCATAGTGCCCAATGAAGTAACCTTGGCAAGCATTTTGCCAGCTTGTTCAAATCTTGGAGCACTGGAGATTGGGCAGAGGGTTGAAGCATACGCAAGGAAGAATGGCTTCTTTAAGAATTTATATGTAAGCAATGCTGTATTGGAGATGTATGCAAAATGTGGTAAGATTGATGTTGCATGGCGGGTGTTCAATGAGATTGGCAGGTTCAGAAACTTGTGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGACAATGTTGCAAGGCCTTTGAGCTTTATGATCAAATGCTGGGGGAAGGAACCTCACCTGATGATGTGACATTTGTGGGGCTCCTCTTGGCATGCACTCATGGAGGCATGGTTGAAAAGGGCAGACATATTTTCAAGTCAATGACCACAGCCTTCCACATTATTCCCAAACTAGAGCACTATGGATGCATGGTTGATCTCCTAGGCCGTGCCGGGCAATTGAGAGAAGCTTATGAGGTAATACAAAGTATGCCCATGAAACCAGACTCGGTGATATGGGGGGCTTTGTTGGGAGCTTGCAGCTTCCATGGTAATGTTGAACTGGCTGAGGTTGCAGCAGAGTCTCTATTTGTACTTGAGCCTTGGAATCCTGGGAACTATGTTATTCTTTCCAACATTTATGCATTAGCTGGCCAATGGGATGGAGTTGCAAAGCTCAGAAAAGTGATGAAGGGCAGCCAAATTACAAAGTCAGCAGGACATAGTTTCATTGAAGAGGGAGGTCAACTGCATAAGTTCATTGTGGAAGATAGATCACATCCTAGAAGCAACGAAATTCTTGCCTTGCTTGATGGAGTTTATGAAATGATAAAGCTTAATAGAAGTGCATTTGAATATCATTTGGATCTTGATTTGAGCAACTAA 1533 0.441 MRQVKQIHGYTLRNGIDNTKILIEKLLEIPNLHYAHMVLHHSPKPNLFLYNKLIQAYSSHPQQQHRCFSLYYQMRLHGFLPNQHTFNFLFSACTSLFSHSLGQMLHTHFIKSGFEPDLFAATALLDMYCKVGTLGLARQLFDEMPVRGVPTWNAIMSGYAKFGDMEGALELFGLMPTRNLVSWTTMISGYSRNKRFGEALGLFLKMEQEKGIVPNEVTLASILPACSNLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWRVFNEIGRFRNLCSWNSMIMGLAVHGQCCKAFELYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTAFHIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMPMKPDSVIWGALLGACSFHGNVELAEVAAESLFVLEPWNPGNYVILSNIYALAGQWDGVAKLRKVMKGSQITKSAGHSFIEEGGQLHKFIVEDRSHPRSNEILALLDGVYEMIKLNRSAFEYHLDLDLSN* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01497 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Phac10g01497 510 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 496 IPR046960 GO:0003723|GO:0009451
Phac10g01497 510 Pfam PPR repeat family 282 328 IPR002885 -
Phac10g01497 510 Pfam PPR repeat family 179 226 IPR002885 -
Phac10g01497 510 Pfam PPR repeat 122 149 IPR002885 -
Phac10g01497 510 Pfam PPR repeat 255 278 IPR002885 -
Phac10g01497 510 Pfam PPR repeat 356 381 IPR002885 -
Phac10g01497 510 FunFam Pentatricopeptide repeat-containing protein 336 481 - -
Phac10g01497 510 Pfam E motif 399 461 IPR046848 -
Phac10g01497 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 46 81 IPR002885 -
Phac10g01497 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 214 IPR002885 -
Phac10g01497 510 Gene3D Tetratricopeptide repeat domain 150 246 IPR011990 GO:0005515
Phac10g01497 510 Gene3D Tetratricopeptide repeat domain 32 149 IPR011990 GO:0005515
Phac10g01497 510 Gene3D Tetratricopeptide repeat domain 285 481 IPR011990 GO:0005515
Phac10g01497 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Phac10g01497 510 Pfam Pentatricopeptide repeat domain 44 93 IPR002885 -
Phac10g01497 510 NCBIfam pentatricopeptide repeat 151 180 IPR002885 -
Phac10g01497 510 NCBIfam pentatricopeptide repeat 181 216 IPR002885 -
Phac10g01497 510 NCBIfam pentatricopeptide repeat 285 317 IPR002885 -
Phac10g01497 510 FunFam Pentatricopeptide repeat-containing protein 59 175 - -
Phac10g01497 510 FunFam Pentatricopeptide repeat-containing protein 208 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01497 Phac-Chr10 38095300 38097470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01497 5 494 Glycoside Hydrolase AT3G49170 34.004 3.24e-89 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01497 - - vra:106780347 1000.35