Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01424 ATGACACTTTGCATCGCCTTTCATAGCCATAGTTTTATGGATAACCTAGTACAACCTTTTCACCTTCTCAATCCATATGTTGTTCAGAACCCACAAACCCACATGCAACCCAGAAGCCTTTCACCCACTTCAGTTTCTCTAGGAATGTCAGAACCCCAGCTGGTTTCTTCTCAATTTTCCTCACAAAACTTCTCTCCATTCTTTCACCCTTTGGATAACTTGGGAGAGTTGAAGACTTTGAGTTCTGTGAGGGAATTGCATGCCCAGATGGTCAAAATGCCAAAAAGAGGGAACTCAGTGACAATGGATGGAAGCATGATGAGGAACTACTTGGAATTTGGAGACTTTGCGTCTGCAACAAAGGTTTTCTTTGTGGGTTTTTCAAGGAATTACCTTTTATGGAATGCTTTTCTGGAGGAGTTTGCTAGTTTTGGAGGTGACTCGCATGAGATTCTGGAGGTGTTCAAGGAATTGCATGATAAAGGAGTAGAATTTGACAGCAAAGCTCTCACCGTTGTTCTGAAAATTTGTTTGGGTTTGATGGACTTGTGGCTTGGGATGGAAGTTCATGCTTGTTTGGTTAAGAGAGGCTTCCATGTTGATGTACACTTGAGTTGTGCATTGATCAATCTCTATGAGAAGTGCTTGGGAATAGATATGGCAAATCAAGTGTTTGATGAGACCCCACTTCAAGAAGATTTCTTGTGGAATACAAGTGTTATGGCAAACTTGAGGAGTGAGAGGTGGGAGAAGGCCTTAGAGTTGTTCCGTCGAATGCAATCTGCTTCTGCCAAAGCCACTGATGGCACCATGGTCAAAATGCTGCAAGCATGTGGAAAGTTGAGAGCTCTCAACGAAGGGAAGCAGCTTCATGGGTATGTTATAAAATTTGGAAGAGTGTCAAATACTTCAGTTTGCAATTCTGTAGTTAGCATGTACTCTAGGAACAATAGACTTGACCTAGCTAGAGCAGTTTTTGATTCAATGGAGGATCATAACCAGGCATCTTGGAACTCAATAATTTCGAGTTATGCAGTCAATGGCTGTTTGAATGGTGCGTGGGATATCCTCCGAAAAATGCAGTCTTCCAGCTTCAAACCAGACATTATAACTTGGAATTCTATTTTGTCTGGCCATCTTCTTCAGGGATCATATGAAATGGTTCTCACCAATTTTCGGAGCCTGCAAAATGGCAATTTCAAGCCAGATTCATGTTCAATAACTAGTGCTCTGCAAGCAGTTATTGAATTGGGTTGCTTTAATCTAGGGAAAGAAATCCATGGCTACATAATGAGAAGTAACCTTGACTATGATGCCTATGTTTGTACTTCTTTAGTGGATATGTATATTAAGAATATTTCCTTAGATAAAGCTGAAGCTGTGTTTCATCATTCTAAGAACAAAAATATTTGTGCTTGGAATTCATTGATATCAGGTTACGCCTACAAGGGCATGTTTAACAATGCGGAAAATCTATTGAACCAGATGGAGGGGGAAGGGATAAAACCTGATTTGGTGACATGGAATAGTTTGATTTCAGGTTATTCAACGTGGGGCCACAGAGAGGAAGCTTTGACCTTGATGAAAAGGATCAAGAGTTTGGGATTAACTCCTAATGTGGTGTCCTGGACTGCTATGATATCAGGTTGCTGTCAAAATAACAACTTCATGGATGCCCTGCAGTTTTTCAGCCAAATGCAAGAAGAAAATGTAAAACCTAACTCTACCACCATTTGCAGCTTACTCCGTGCATGTGCGGGTCCGTCACTGTTAAAGAAAGGTGAAGAGATACACTGCTTTTGTATGAAACATGGGTTTGTGGATGACATATATGTGGCCACAGCCCTTATTGACATGTATAGTAAGGGAGGAAAACTAAGAGTAGCCCATGAGGTTTTCAGGAAAATACAGGGGAAAACACTACCATGTTGGAATTGCATGATGATGGGATATGCTACTTATGGCCGTGGTGAAGAGGTATTCACTCTTTTTGACAGCATGTGCAAAACAGGTATCATACCTGATGCTATAACCTTCACCATTCTTCTATCTGGCTGCAAGAATTCAGGTTTAGTTATGGAAGGGTGGAAGCACTTTGACAGCATGAAGAGGTACAATATTACTCCAACTATTGAGCATTACTCTTGCATGGTAGATCTTCTTGGAAAAGCTGGCTTTCTTGATGAAGCTTTGGATTTCATCCACGCCATGCCACATAAGGCAGATGCTAGTATTTGGGGTGCTCTTCTTTCAGCATGCAGAATTCACAAAGATGTTAAGATAGCAGAGGTTGCAGCAAGGAATCTTTTCAGGTTGGAACCATATAACTCTGCTAACTATGTATTGATGATGAACATATATTCCAGTTTTGATAGGTGGGGGGACGTAGAGCGTCTTAAAAACTCAATGACTGCCATGGGAGTGAAAATTCCAAATGTTTGGAGTTGGACACAAGTTAGGCAAACTATTCATGTGTTCTCCACAGAAGGGGAATCACATCCAGAAGAAGGAGAGATATATTTTGAGTTATATCAATTAGTCTCTGAGATAAGAAAGCTGGGATATGTACCTGATACACATTGTGTACTTCAGAACATTGATGAGAAGGAGAAGGAAAAGGTTCTGCTCAGTCACACAGAGAAGTTGGCAATGACATATGGACTGATGAACATTAAGGATGGAACTCCCATCAGGGTAGTGAAGAACACAAGAATTTGTCAAGACTGTCACACAGCAGCAAAGTACATTTCTCTGGCTCGAAACCGTGAGATTTTCCTCAGAGACGGTGGCCGTTTTCACCATTTCATGAATGGAGAATGCTCATGTAATGATCGTTGGTAA 2841 0.4104 MTLCIAFHSHSFMDNLVQPFHLLNPYVVQNPQTHMQPRSLSPTSVSLGMSEPQLVSSQFSSQNFSPFFHPLDNLGELKTLSSVRELHAQMVKMPKRGNSVTMDGSMMRNYLEFGDFASATKVFFVGFSRNYLLWNAFLEEFASFGGDSHEILEVFKELHDKGVEFDSKALTVVLKICLGLMDLWLGMEVHACLVKRGFHVDVHLSCALINLYEKCLGIDMANQVFDETPLQEDFLWNTSVMANLRSERWEKALELFRRMQSASAKATDGTMVKMLQACGKLRALNEGKQLHGYVIKFGRVSNTSVCNSVVSMYSRNNRLDLARAVFDSMEDHNQASWNSIISSYAVNGCLNGAWDILRKMQSSSFKPDIITWNSILSGHLLQGSYEMVLTNFRSLQNGNFKPDSCSITSALQAVIELGCFNLGKEIHGYIMRSNLDYDAYVCTSLVDMYIKNISLDKAEAVFHHSKNKNICAWNSLISGYAYKGMFNNAENLLNQMEGEGIKPDLVTWNSLISGYSTWGHREEALTLMKRIKSLGLTPNVVSWTAMISGCCQNNNFMDALQFFSQMQEENVKPNSTTICSLLRACAGPSLLKKGEEIHCFCMKHGFVDDIYVATALIDMYSKGGKLRVAHEVFRKIQGKTLPCWNCMMMGYATYGRGEEVFTLFDSMCKTGIIPDAITFTILLSGCKNSGLVMEGWKHFDSMKRYNITPTIEHYSCMVDLLGKAGFLDEALDFIHAMPHKADASIWGALLSACRIHKDVKIAEVAARNLFRLEPYNSANYVLMMNIYSSFDRWGDVERLKNSMTAMGVKIPNVWSWTQVRQTIHVFSTEGESHPEEGEIYFELYQLVSEIRKLGYVPDTHCVLQNIDEKEKEKVLLSHTEKLAMTYGLMNIKDGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGECSCNDRW* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01424 946 Pfam E motif 756 812 IPR046848 -
Phac10g01424 946 Pfam DYW family of nucleic acid deaminases 854 946 IPR032867 GO:0008270
Phac10g01424 946 Gene3D Tetratricopeptide repeat domain 286 426 IPR011990 GO:0005515
Phac10g01424 946 Gene3D Tetratricopeptide repeat domain 595 689 IPR011990 GO:0005515
Phac10g01424 946 Gene3D Tetratricopeptide repeat domain 690 770 IPR011990 GO:0005515
Phac10g01424 946 Gene3D Tetratricopeptide repeat domain 183 285 IPR011990 GO:0005515
Phac10g01424 946 Pfam PPR repeat 305 332 IPR002885 -
Phac10g01424 946 Pfam PPR repeat 713 738 IPR002885 -
Phac10g01424 946 Pfam PPR repeat 614 638 IPR002885 -
Phac10g01424 946 Pfam PPR repeat 236 261 IPR002885 -
Phac10g01424 946 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 69 240 IPR046960 GO:0003723|GO:0009451
Phac10g01424 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Phac10g01424 946 NCBIfam pentatricopeptide repeat 506 540 IPR002885 -
Phac10g01424 946 NCBIfam pentatricopeptide repeat 541 574 IPR002885 -
Phac10g01424 946 NCBIfam pentatricopeptide repeat 336 369 IPR002885 -
Phac10g01424 946 NCBIfam pentatricopeptide repeat 643 676 IPR002885 -
Phac10g01424 946 NCBIfam pentatricopeptide repeat 305 332 IPR002885 -
Phac10g01424 946 NCBIfam pentatricopeptide repeat 472 504 IPR002885 -
Phac10g01424 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Phac10g01424 946 Gene3D Tetratricopeptide repeat domain 469 594 IPR011990 GO:0005515
Phac10g01424 946 Gene3D Tetratricopeptide repeat domain 59 182 IPR011990 GO:0005515
Phac10g01424 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
Phac10g01424 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Phac10g01424 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Phac10g01424 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Phac10g01424 946 Pfam PPR repeat family 333 378 IPR002885 -
Phac10g01424 946 Pfam PPR repeat family 468 507 IPR002885 -
Phac10g01424 946 Pfam PPR repeat family 538 586 IPR002885 -
Phac10g01424 946 Pfam PPR repeat family 643 686 IPR002885 -
Phac10g01424 946 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 611 836 - -
Phac10g01424 946 FunFam Pentatricopeptide repeat-containing protein At1g20230 301 423 - -
Phac10g01424 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Phac10g01424 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 332 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01424 Phac-Chr10 37406277 37409815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01424 166 946 Glycoside Hydrolase AT3G49170 32.250 1.73e-127 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01424 - - gmx:100796795 1672.52