Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00968 ATGCGATACCCTCTCAAAATCCTTCACAAAGTGCCCTTACTACTATCATTCAAGCATGGCTCCAAACGCTTCCACACACTCAAACATGAACACCACCTGTTCGACCTTATTCTCCACCCAAATGCTGCCTCGGTTAACCGTTCAATGCTCAACCATTTGCACGACCACCTTCCTTTTCAAGCTCTTGCTGCATTCAAGGACCAGTTTCAGTTGCATTCTCTTCAAAATGTTGACGAGGTCACCCTTGCCTTGTCCCTCAAGGCATGTCAAGGAGAGTTGAAACTTGGATGTCAAATCCACGGACTCCTTGTGAGTAGCGGGTTAGTTTCGCTTGTTTCCGTGTCTAATTCTCTCATGAAAATGTACTGCAAGTCTGGGAATTTCGGGAAGGCTTTGCTTGTGTTTGAGAATTTGAGTCATCCTGACATGGTGTCTTGGAATACTGTGCTTTCTGGGTTTGAGGAGAGTTTGGAAGCTTTGCTTTTTGCACGGTCTATGCATTTTCGTGGGATAGTTTTTGATCAGGTGACATATACTACTGCTCTTTCGTTTTGTTGGGGTGATCATGGGATTTTATTTGGATGGCAATTGCATTCTCTTGTGGTTAAGTGTGGATTTGAGCTTGGGAGGCAAATACATGGTTTGACCCAGAAAGTGGGATATGGAACACATGTATCAGTTTGCAATGTTTTGATGTCAACTTATTCAAAATGTGAGGTCCGTAATGACGCAAAAGCTGTTTTTGACGGCATTAGTAATCGGAATGTAGTGTCTTGGACGACAATGATTTCTATTGATGAAGAAGATGCAATGTCTCTCTTTAATGCAATGAGAATTGATGGAGTGTATCCAAATGATGTTACGTTTATAGGATTAATACATGCTGTAACAATCAGGAATTTAGTGACAGAAGGTCTAATGATCCATGGGTTATGCATAAAAATCTGCTTTTTGTCAGAACAAACCGTCTCCAATAGCCTTGTTACCATGTATGCCAAATTTGAGTGCATTCGAGAATCAGAGAAGATTTTTGAGGAGCTTAACTGTCGTGAAACGGTATCGTGGAATGCATTGATTTCAGGGTATGCTCAAAATGGCTTGTATAAAGAAGCTTTCCGCACATTTTTGTCTGCGGTGAAGGAGATAACGCCCAGCCAGTACACATTTAGTAGTGTATTAAATGCTATTGCTGCTGCTGAGGATATACCATTGAAACATGGGCAACGTTGCCATTCTTACTTGCTCAAACTTGGTTTAAACACTGACCCAACTGTTTCAGGGGCTCTACTTGACATGTATGGCAAGCGTGGAAACAATATTGAGTCTCAAAGAGTGTTCGATGAGACACTTGAACGGACCCAGTATGCTTGGACAGCAATAATATCTGCCTATGCCCGCCATGGAGACTTTGAGACTGTGATGAGTTTGTATACAGAAATGGAGAGGGAAGGAATCAGTCCTGACTTCATCACTTTCCTTTCTGTTTTAACCGCTTGCTGTAGAAAGGGCATGGTTGATGTAGGCCAAAGAGTATTTGAGTCTATGGTGAAGAAACATTCAATTGAGCCCACCTCTGAACATTATTCTATTATGGTGGACATGATGGGCCGTGCTGGACGACTAGACGAGGCAGAAGAGTTGATGCACCAGATTCCGGGAGGGCCTGGATTGTCTGCGTTGCAAAGTTTTCTTGGATCTTGTAGAATACATGGGAATCTGGAGATGGCCGAGAAAGTTGCTGGTTGTTTGATAGAAATGGATCCTGCAAGTTCAGGTCCATATGTGTTAATGGCAAACATGTATGCTGAGAAAGGGAAGTGGGAGAAAGTTGCTGAAGTGCGAAGAAAGATGAGAGGGAGAGGAGTAAAGAAGGAAGTGGGATTTAGTTGGGTGGATGTTTCTAATGTTGACTCCTTGTATTTGCATAGTTTCTCCTCTGGGGATAAGTCACATCCAGAGAATGAGAATATTTGTAAAATGGCAGAGTTTCTGGGATTGCAAATGAATTTTTTGAAAGAGAGCAGAGAGAGGGAAGGAGAGTGCTGTCATGAGTAA 2055 0.4248 MRYPLKILHKVPLLLSFKHGSKRFHTLKHEHHLFDLILHPNAASVNRSMLNHLHDHLPFQALAAFKDQFQLHSLQNVDEVTLALSLKACQGELKLGCQIHGLLVSSGLVSLVSVSNSLMKMYCKSGNFGKALLVFENLSHPDMVSWNTVLSGFEESLEALLFARSMHFRGIVFDQVTYTTALSFCWGDHGILFGWQLHSLVVKCGFELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVRNDAKAVFDGISNRNVVSWTTMISIDEEDAMSLFNAMRIDGVYPNDVTFIGLIHAVTIRNLVTEGLMIHGLCIKICFLSEQTVSNSLVTMYAKFECIRESEKIFEELNCRETVSWNALISGYAQNGLYKEAFRTFLSAVKEITPSQYTFSSVLNAIAAAEDIPLKHGQRCHSYLLKLGLNTDPTVSGALLDMYGKRGNNIESQRVFDETLERTQYAWTAIISAYARHGDFETVMSLYTEMEREGISPDFITFLSVLTACCRKGMVDVGQRVFESMVKKHSIEPTSEHYSIMVDMMGRAGRLDEAEELMHQIPGGPGLSALQSFLGSCRIHGNLEMAEKVAGCLIEMDPASSGPYVLMANMYAEKGKWEKVAEVRRKMRGRGVKKEVGFSWVDVSNVDSLYLHSFSSGDKSHPENENICKMAEFLGLQMNFLKESREREGECCHE* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00968 684 FunFam Pentatricopeptide repeat-containing protein mitochondrial 424 650 - -
Phac10g00968 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Phac10g00968 684 Gene3D Tetratricopeptide repeat domain 198 312 IPR011990 GO:0005515
Phac10g00968 684 Gene3D Tetratricopeptide repeat domain 319 414 IPR011990 GO:0005515
Phac10g00968 684 NCBIfam pentatricopeptide repeat 455 488 IPR002885 -
Phac10g00968 684 NCBIfam pentatricopeptide repeat 353 376 IPR002885 -
Phac10g00968 684 NCBIfam pentatricopeptide repeat 116 137 IPR002885 -
Phac10g00968 684 NCBIfam pentatricopeptide repeat 490 524 IPR002885 -
Phac10g00968 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Phac10g00968 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 381 IPR002885 -
Phac10g00968 684 Gene3D Tetratricopeptide repeat domain 424 659 IPR011990 GO:0005515
Phac10g00968 684 Gene3D Tetratricopeptide repeat domain 58 191 IPR011990 GO:0005515
Phac10g00968 684 FunFam Pentatricopeptide repeat-containing protein mitochondrial 205 319 - -
Phac10g00968 684 Pfam PPR repeat 521 550 IPR002885 -
Phac10g00968 684 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 207 671 IPR046960 GO:0003723|GO:0009451
Phac10g00968 684 Pfam E motif 570 632 IPR046848 -
Phac10g00968 684 Pfam PPR repeat 325 347 IPR002885 -
Phac10g00968 684 Pfam PPR repeat 116 136 IPR002885 -
Phac10g00968 684 Pfam PPR repeat family 455 501 IPR002885 -
Phac10g00968 684 Pfam PPR repeat family 352 396 IPR002885 -
Phac10g00968 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 523 IPR002885 -
Phac10g00968 684 FunFam Pentatricopeptide repeat-containing protein, mitochondrial isoform A 41 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00968 Phac-Chr10 30086385 30088703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00968 86 657 Glycoside Hydrolase AT3G49170 31.872 7.48e-89 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00968 - - gmx:102660550 848.966