Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00961 ATGTTGCAACCCTTCACTACTTTCTTCACCTTTCTTCATAGTAAGACCAAATCCATCCTCAACCAACCAAGAATCATGATGAGTGCATGCTACAAAGGAAACCGACCCAAGAGAAAATTCTCTTCAGATTCGGACTTGTCAATCTCTTCTTTCCTTCACATGGAGCTGTCCACTCAGTTTCATCAAGTTTTCAATCTGATTGACTCTAATGGGGATGGGAAGATCTCAACCACTGAGCTGAGTGAAGTGCTTGCATGCCTTGGATACAGCAAGTGCACTGCTGCTAAGGAAGCTGAAGGCATGGTGAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGGTTGTCATGAATGGCATGGAAAAGGAAGAGGAAAAGGAAGAAGAAGAAGAAGACACAATTGATGGTTACCTCATGGATGCTTTTCTTGTCTTTGATGCTGACAAGAATGGCCTCATTTCAGCCAAGGAACTGCAGAGAGTTCTCTTCAATCTAGGGTGTGAAAACTGCAGTCTCAGAGAGTGCAAACGTATGATCAAAGGTGTTGATAAGAATGGAGATGGTTTTGTAGATTTTCAAGAATTTCGATCCATGATGCAAAGTGGACTTGCAAGTTAG 633 0.4265 MLQPFTTFFTFLHSKTKSILNQPRIMMSACYKGNRPKRKFSSDSDLSISSFLHMELSTQFHQVFNLIDSNGDGKISTTELSEVLACLGYSKCTAAKEAEGMVRVLDFNGDGFVDLDEFMVVMNGMEKEEEKEEEEEDTIDGYLMDAFLVFDADKNGLISAKELQRVLFNLGCENCSLRECKRMIKGVDKNGDGFVDFQEFRSMMQSGLAS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00961 210 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Phac10g00961 210 Gene3D - 142 207 - -
Phac10g00961 210 ProSiteProfiles EF-hand calcium-binding domain profile. 55 90 IPR002048 GO:0005509
Phac10g00961 210 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Phac10g00961 210 ProSiteProfiles EF-hand calcium-binding domain profile. 175 210 IPR002048 GO:0005509
Phac10g00961 210 ProSitePatterns EF-hand calcium-binding domain. 151 163 IPR018247 -
Phac10g00961 210 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Phac10g00961 210 SMART efh_1 59 87 IPR002048 GO:0005509
Phac10g00961 210 SMART efh_1 142 170 IPR002048 GO:0005509
Phac10g00961 210 SMART efh_1 179 207 IPR002048 GO:0005509
Phac10g00961 210 SMART efh_1 97 125 IPR002048 GO:0005509
Phac10g00961 210 FunFam calmodulin-like protein 3 132 208 - -
Phac10g00961 210 Pfam EF-hand domain pair 59 122 IPR002048 GO:0005509
Phac10g00961 210 Pfam EF-hand domain pair 143 205 IPR002048 GO:0005509
Phac10g00961 210 ProSitePatterns EF-hand calcium-binding domain. 188 200 IPR018247 -
Phac10g00961 210 Coils Coil 115 145 - -
Phac10g00961 210 Gene3D - 5 141 - -
Phac10g00961 210 ProSiteProfiles EF-hand calcium-binding domain profile. 138 173 IPR002048 GO:0005509
Phac10g00961 210 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 143 205 - -
Phac10g00961 210 SUPERFAMILY EF-hand 58 205 IPR011992 -
Phac10g00961 210 CDD EFh 59 122 IPR002048 GO:0005509
Phac10g00961 210 CDD EFh 142 205 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00961 Phac-Chr10 29856340 29857453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00961 147 208 EF-hand Containing Proteins AT1G24620 35.484 4.25e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00961 - - gmx:100779339 331.257