Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3879 ATGCGTGAGATTCTTCACATTCAAGGAGGACAGTGTGGAAACCAAATAGGAACAAAGTTCTGGGAAGCGGTATGCGATGAGCACGGGATTGACCCCATAGGACAATATATAGGGAACTCCAAACTTCAACAACTCGAAAGAGTCAATGTTTATTACAATGAGGGATCTAACGGGCGTTATGTTCCCAGGGCAGTGTTGATGGACCTTGAGCCTGGCACCATGGATGCTGTCCGGTCCGGCCCTTATGGGCAGATTTTCCGACCAGACAACTTTGTATTTGGACAGTCTGGTGCCGGAAACAATTTCGCCAAGGGTCATTACACTGAGGGTGCCGAGCTCATTGACTTTGTTCTTGATGTTGTAAGGAAGGAGGTTGAGAATTGTGATTGCTTGCAAGGATTTCAAGTGTGCCACTCCTTGGGAGGAGGAACGGGTTCTGGAATGGGAACTCTACTCATTTCAAAGATCAGAGAAGAATACCCTGATCGAATGATGCTCACTTTCTCTGTCTTTCCATCTCCAAAGGTGTCAGACACAGTTGTTGAGCCTTACAATGCAACACTTTCTGTTCACCAATTGGTGGAGAATGCCGATGAGTGTATGGTCCTTGATAATGAAGCACTCTATGACATCTGCTTCAGGACCCTCAAACTCACCACACCAAGTTTTGGAGATTTGAATCATTTGATCTCAGCAACAATGAGTGGAGTGACTTGTTGCTTAAGATTCCCGGGTCAGCTAAATTCAGACCTGCGGAAGCTAGCAGTGAACTTGATCCCATTTCCACGCCTTCACTTCTTCATGGTGGGTTTCGCTCCCCTGACATCTCAAGGATCGCAGAACTACCGTGCACTTACCGTACCAGAACTTACACAACAGATGTGGGATGCCAAGAACATGATGTGTGCGGCGGATCCACGCCATGGCCGTTATTTAACAGCCTCAGCGGTGTTTAGAGGGAAAATGAGCACAAAAGAAGTGGATGAACAGGTAATGAATGTGCAGAACAAGAATTCTTCTTACTTCGTTGAATGGATTCCCAATAATGTGAAGTCCAGTGTCTGTGATGTCCCACCTAGAGGCCTTTCGATGGCTTCGACATTTGTTGGCAATTCGACATCTATACAGGAGATGTTTAGGAGAGTGAGTGAACAGTTCTCTGCCATGTTCAGAAGGAAAGCATTCTTGCATTGGTATACCGGAGAAGGAATGGATGAAATGGAATTTACTGAAGCAGAAAGCAATATGAATGATCTTGTTGCTGAATATCAACAATACCAGGATGCCCCAGTTTATGAAGATGGTGATGATTACCAAGAAGAAGAAGATGCTCAAAGCTGA 1341 0.4534 MREILHIQGGQCGNQIGTKFWEAVCDEHGIDPIGQYIGNSKLQQLERVNVYYNEGSNGRYVPRAVLMDLEPGTMDAVRSGPYGQIFRPDNFVFGQSGAGNNFAKGHYTEGAELIDFVLDVVRKEVENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSQGSQNYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQVMNVQNKNSSYFVEWIPNNVKSSVCDVPPRGLSMASTFVGNSTSIQEMFRRVSEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAPVYEDGDDYQEEEDAQS* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3879 446 SMART Tubulin_4 48 245 IPR003008 GO:0005525
Mtr8g3879 446 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Tubulin signature 52 71 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Tubulin signature 94 105 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Tubulin signature 107 131 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Tubulin signature 133 151 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Tubulin signature 152 173 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Tubulin signature 177 190 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Tubulin signature 191 211 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Tubulin signature 371 399 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 SMART Tubulin_C_4 247 384 IPR018316 -
Mtr8g3879 446 CDD beta_tubulin 2 427 - -
Mtr8g3879 446 Gene3D - 264 374 IPR037103 -
Mtr8g3879 446 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
Mtr8g3879 446 PANTHER TUBULIN 1 436 IPR000217 GO:0005874|GO:0007017
Mtr8g3879 446 Pfam Tubulin C-terminal domain 262 383 IPR018316 -
Mtr8g3879 446 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Mtr8g3879 446 Coils Coil 409 429 - -
Mtr8g3879 446 Pfam Tubulin/FtsZ family, GTPase domain 3 212 IPR003008 GO:0005525
Mtr8g3879 446 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 141 147 IPR017975 GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 SUPERFAMILY Tubulin C-terminal domain-like 245 429 IPR008280 -
Mtr8g3879 446 Gene3D Tubulin/FtsZ, GTPase domain 1 263 IPR036525 -
Mtr8g3879 446 PRINTS Beta-tubulin signature 42 59 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 89 100 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 109 127 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 153 165 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 213 225 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 231 240 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 246 259 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 266 282 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 312 330 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 330 344 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 348 371 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 378 389 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PRINTS Beta-tubulin signature 413 431 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr8g3879 446 PANTHER TUBULIN BETA-9 CHAIN 1 436 - -
Mtr8g3879 446 Gene3D Helix hairpin bin 375 430 IPR023123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3879 Mtr-Chr8 49453877 49456030 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3879 K07375 - gmx:100801893 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3879 8 49453877 49456030 Mtr8g3879 8 49453877 49456030 ECH