Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3876 ATGGCTGCTTCCCTCTTCACCACTCTCTTCTTCACTGCTTTCCTTATCGCATACACTCCAGTAGTGAAGGTATCAGCAGCATCAGTAGTATTTTACAACAAGTGTCCCCACCCAGTGTGGCCAGCAATTCAACCCGGTGCCGGAAAACCCATTCTGGCCCGCGGCGGCTTCAACCTCCCACCAAACAAAGCTTATTCCCTCCAAGTCCCACCACAATGGTCAGGCCGTTTCTGGGGCCGTCACGGCTGCACCTTTGACGCATCAGGCCACGGCCATTGCGCCACTGGAGACTGCGGCGGATCTCTCTTCTGCAACGGCATAGGCGGAACCCCACCAGCCACACTCGCCGAGTTCACATTTGGGAAAGATCTAGATTTCTATGACGTCAGCCTGGTCGACGGTTACAACTTACCGATTTCCATTACACCTTTTAAGGGATCTGGAAAATGTAGCTACGCTGGTTGTGTGAGTGATCTAAACTTGATGTGCCCAGTAGGGTTGCAGGTGAGGTCACGTGACAAGAAGCACGTGGTGGGTTGTAGAAGTGCTTGTGCTGCTTTCAACTCTCCTAGGTATTGCTGTACTGGTAACTTTGGTACCCCACAGACCTGCAAGCCCACTGCTTATTCAAGAATCTTCAAAACTGCTTGCCCAAAGGCTTACTCTTATGCTTATGATGACCCTACCAGTATTGCTACTTGCACCAATGCTAGTTACATGATCACTTTCTGCCCTCGTCACCGTCGTTGA 750 0.5107 MAASLFTTLFFTAFLIAYTPVVKVSAASVVFYNKCPHPVWPAIQPGAGKPILARGGFNLPPNKAYSLQVPPQWSGRFWGRHGCTFDASGHGHCATGDCGGSLFCNGIGGTPPATLAEFTFGKDLDFYDVSLVDGYNLPISITPFKGSGKCSYAGCVSDLNLMCPVGLQVRSRDKKHVVGCRSACAAFNSPRYCCTGNFGTPQTCKPTAYSRIFKTACPKAYSYAYDDPTSIATCTNASYMITFCPRHRR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3876 249 SMART tha2 29 245 IPR001938 -
Mtr8g3876 249 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Mtr8g3876 249 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Mtr8g3876 249 PRINTS Pathogenesis-related protein signature 89 118 IPR001938 -
Mtr8g3876 249 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Mtr8g3876 249 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Mtr8g3876 249 PANTHER OS03G0233200 PROTEIN 11 246 IPR001938 -
Mtr8g3876 249 CDD TLP-PA 31 244 - -
Mtr8g3876 249 ProSitePatterns Thaumatin family signature. 89 104 IPR017949 -
Mtr8g3876 249 Gene3D Thaumatin 27 245 IPR037176 -
Mtr8g3876 249 PANTHER THAUMATIN-LIKE PROTEIN 11 246 - -
Mtr8g3876 249 SUPERFAMILY Osmotin, thaumatin-like protein 29 246 IPR037176 -
Mtr8g3876 249 Pfam Thaumatin family 33 245 IPR001938 -
Mtr8g3876 249 ProSiteProfiles Thaumatin family profile. 26 247 IPR001938 -
Mtr8g3876 249 PIRSF PR5 1 249 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3876 Mtr-Chr8 49408007 49409171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3876 1 245 Receptor kinase-like Gene Family AT5G38280 43.254 1.09e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3876 - - tcc:18604325 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3876 8 49408007 49409171 Mtr8g3876 8 49408007 49409171 ECH