Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3873 ATGGATCAGGATGCAATATTTGATGAAGAGTGTGATTACTTGTTCAAGGCAGTGCTGATTGGTGACTCTGGAGTTGGGAAATCAAATCTGCTTTCAAGGTTTGCAAAAGATGAATTCAGGTTGGATTCAAAACCAACCATAGGAGTTGAATTTGCTTACAGAAACATCAAGGTCAGAGATAAACTCATCAAAGCTCAAATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCTATCACAAGTTCGTATTATAGAGGAGCCTTGGGAGCACTGCTAGTGTATGACATAACGAGGCGATCAAGTTATGAGAGTGTAGGCAGATGGTTAGTGGAGCTACGGGAGTTTGGCGGCGAAGAGATGGTAGTTATTCTAGTTGGAAACAAATGTGATCTTGGTGAATCAAGAGAAGTTGAGGAAGAAGAAGCAAAAAGGTTTGCAGAGGCAGAAGGGTTGTGTTTTATGGAAACCTCTGCTCTGAAGAATCTGAACGTTGAGCAAGTGTTCTTACAAATGATCACAACTATTTTTGACATAACAAACCAGAGAAGTTTGGATGCCAAAATGGATGAGACACCAATTAATCATCTTTCCAATGGGAAAGAGATTCATATAGCTGATGAAGTTACCGCAACTAAACAGGCTCCTTGTTGTTCGTGA 657 0.4094 MDQDAIFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRSSYESVGRWLVELREFGGEEMVVILVGNKCDLGESREVEEEEAKRFAEAEGLCFMETSALKNLNVEQVFLQMITTIFDITNQRSLDAKMDETPINHLSNGKEIHIADEVTATKQAPCCS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3873 218 PANTHER DRAB5-RELATED 6 218 - -
Mtr8g3873 218 TIGRFAM small_GTP: small GTP-binding protein domain 14 168 IPR005225 GO:0005525
Mtr8g3873 218 ProSiteProfiles small GTPase Rab1 family profile. 10 217 - -
Mtr8g3873 218 PRINTS Transforming protein P21 ras signature 15 36 - -
Mtr8g3873 218 PRINTS Transforming protein P21 ras signature 38 54 - -
Mtr8g3873 218 PRINTS Transforming protein P21 ras signature 56 78 - -
Mtr8g3873 218 PRINTS Transforming protein P21 ras signature 118 131 - -
Mtr8g3873 218 PRINTS Transforming protein P21 ras signature 153 175 - -
Mtr8g3873 218 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 6 218 - -
Mtr8g3873 218 SMART rho_sub_3 17 178 IPR001806 GO:0003924|GO:0005525
Mtr8g3873 218 CDD Rab11_like 12 176 - -
Mtr8g3873 218 SMART rab_sub_5 15 178 - -
Mtr8g3873 218 ProSiteProfiles small GTPase Rho family profile. 8 175 - -
Mtr8g3873 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 189 IPR027417 -
Mtr8g3873 218 ProSiteProfiles small GTPase Ras family profile. 9 218 IPR001806 GO:0003924|GO:0005525
Mtr8g3873 218 SMART ras_sub_4 12 178 - -
Mtr8g3873 218 Pfam Ras family 16 175 IPR001806 GO:0003924|GO:0005525
Mtr8g3873 218 SMART ran_sub_2 20 218 - -
Mtr8g3873 218 Gene3D - 7 217 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3873 Mtr-Chr8 49366935 49369026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3873 16 179 EF-hand Containing Proteins AT5G27540 28.409 1.88e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3873 K07976 - mtr:MTR_8g107070 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3873 8 49366935 49369026 Mtr8g3873 8 49366935 49369026 ECH