Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3846 ATGCCGTTTCCGATGATGCGAATTCGAATGCGGATTCCCTCCGCCGGCATCTTCAGACTCGCCGTTCGTCATTTCCTCACTACCACCACCACAACAACCACTAACCTCCGCATTCGTCTTTCATCTTCCTCACCCGCCGCCCTAAACCACCATAGACACAGGACCTTCGCTCTTCCATTTTTTCACCAACAAACCTCCACTTACGGCCGTTTTGCCTTCAAAGACGTTTCCTCTGATGAATCCGACCTCGAATTCGCTTCTTCTCGCCCTCAACAACAACAACTGGGAGATTCGACTCTCGAAAACATTGATTCTTGGAGATGGAAACTCACCATGCTTCTTCGCAATAAAGATCAGCAAGAAGTTGTGTCCAATGAGAAAAAAGACCGTCGTGATTTTCTGCAACTTGAAACTTTAGCTACCAGGATGGGCTTATACAGTCGACAATATGCAAGAGTTGTTGTCTTTAGCAAGGCGCCTTTGCCGAATTATCGCCCTGACCTCGATGATAAGCGTCCGCTGAGAGAGGTAACCTTACCATTTGGTGTTCATAGAGAAGTAGACACTCATCTCCTTGCTCATCTTTCACATAAGGCTACAAAAAGAGTAGGCTCTTTCGATGATTCCTTGCATAGATCAAGGGATGATGGAAGCATTCCTGCGGATGAAGGGATTTATGGGCATCCGGAACCCATGAGCCATAATAGTGTTGCCAAAGAGAAAATCCTTCAACGAAGAAGTTTGCAACTGCATCATCAACAACAAGACTGGCAGGAATCTCCCGAAGGCCAAAAGATGCTTGAATTTCGCCGAAGTCTTCCTGCATTCAAAGAGAAAGATGCATTTTTGAAAGTTGTTTCAGAGAATCAGGTCATTGTCGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGATTGAAGCTGCACGTGGATCTCTATGTAACATAATTTGTACTCAGCCTAGAAGAATATCTGCTATATCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAAAAATTGGGAGAATCTGTTGGTTATAAAGTTCGGTTGGAGGGTATGAGAGGGAGGGATACTCGTCTTCTTTTTTGCACCACAGGCGTGTTATTGCGGAGACTACTTGTGGATAGAAGTTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGATCTCCTCCCTCGCCGCCCTGATTTGAGATTAATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCATATTTTGATGGTGCCCCAACGATACATATCCCTGGGTTTACCTTTCCAGTTCGAGCACAATTTCTTGAGGATATTCTGGAAAGGACCGGATATCGTTTGACTCCTTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAACAAGCCCAGTCTTTCAAAAAACGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCATTAGAGGTTGCAGACTTTAAGGGGTATAGCCTACGCACCAAGGAGTCAATGTCCTGCTGGAACCCTGATTCAATTGGTTTCAACCTTATTGAACATGTGCTTTGCCACATTGTTAAGAATGAAAGGCCAGGTGCTGCGTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATAAACTCCATGCTCATCCTTTGTTGGGTGATCAGAGCCGAGTATTACTTCTTGCCTGCCATGGCTCTATGTCCAGCTCAGAGCAGAAATTAATATTTGAAAATCCTGGAGGAGGGGTGAGGAAGATTGTTCTGGCTACTAATATGGCAGAGACTAGTATTACTATCAATGACGTTGTATTTGTGGTTGATTGTGGAAAAGCAAAGGAGACATCATATGATGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCTGCCAGACAGAGAAAAGGAAGGGCAGGTCGTGTTCAATCTGGCGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTACAGTCCTTATGTCTACAAATAAAAAGTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGTGCTCTCCAGCCACCAGAGCCTCTGTCGGTTCAAAATGCTGTTGATTATTTGAAAATTATTGGTGCTTTAGACGAGAATGAAAATTTGACAGTTCTAGGGTGCAAGTTGTCAATGCTTCCGGTAGAGCCTAAGCTTGGCAAGATGCTCATCTTGGGAGCTATTTTCAACTGTTTGGATCCCATATTGACTGTTGTTGCTGGGCTTAGTGTGAGAGATCCATTTGTTGTGCCGGCTGACAAGAAGGATCTTGCAGAGTCGGCCAAGGCCCAGATTGCTGCTCGTGGATACAGTGATCATCTTGCACTTGTTCGTGCTTATGATGGTTGGAAAGATGCTGAAGCACAGCAAGCTGGTTATGAGTTCTGTTGGCGTAATTTTCTCTCGTCTCAAACCCTTAGGGCTATTGATTCTCTCCGAAAGCAATTCTTTCACTTGCTCAAAGATATTGGTCTGGTTGGCAACAATTCTGAAACCAACAATAAATGGAGTAATGAGGAGCATCTGCTCCGAGCAGTTATCTGTGCGGGTTTGTTTCCTGGAATATCCTCTGTTGTGAACAAGGAAAAGTCAATATCACTGAAAACAATGGAGGATGGTCAGGTTCTTCTGTATGCTAACTCGGTAAATGGAAGTGTAGCCAAAATTCCATACCCATGGATAGTGTTTAATGAAAAGATTAAAGTGAATACAGTATTCCTTAGGGATTCAACTGGCATATCTGATTCCATGCTGCTCTTATTTGGCGGGAACATATCCAAAGGTGGACTGGATGGTCACCTAAAAATGTTGGGAGGGTATCTAGAATTTTTCATGAAACCAGAATTAGCCAAGACGTACTCAACTTTGAAGAGGGAACTGGAAGAATTGGTACATAAAAAACTTGCGGATCCTATGTTCGATATACACTCGCATAATGAGCTTCTTTCAGCTGTTAGACTGTTGGTATCAGAGGACAACTGCGACGGAAGATTTGTCTATGGTCACCAGGTCTTACCACAGTTAAAGAAGGAAACGAAATCCAAAAGTGGTGATGGAGCTGGGGGTGATAATTCTAAAAATCAGCTTCAAACATTCCTCAGCAGGGCTGGACATCAGTTACCAACTTACAAAACACAGGAGCTGAGAAACAATCAATTCCGTTCTACTGTCATATTCAACGGCTTGGATTTTGTTGGCCAGCCATGCAACAGCAAGAAACTAGCAGAAAAATCTGCTGCTGCTGAGGCTATTCTATGGTTAAAAGGGGATAATACCCATTCATCTGGTGATATTGATCATGCATCTGTGCTTTTGAAGAAAAGGAACAAGAAAAGTAAAAAAAAATCGTTTAGTGATGCTAAATGGAGTTAA 3519 0.4243 MPFPMMRIRMRIPSAGIFRLAVRHFLTTTTTTTTNLRIRLSSSSPAALNHHRHRTFALPFFHQQTSTYGRFAFKDVSSDESDLEFASSRPQQQQLGDSTLENIDSWRWKLTMLLRNKDQQEVVSNEKKDRRDFLQLETLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPLREVTLPFGVHREVDTHLLAHLSHKATKRVGSFDDSLHRSRDDGSIPADEGIYGHPEPMSHNSVAKEKILQRRSLQLHHQQQDWQESPEGQKMLEFRRSLPAFKEKDAFLKVVSENQVIVVSGETGCGKTTQLPQYILESEIEAARGSLCNIICTQPRRISAISVSERVAAERGEKLGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFDGAPTIHIPGFTFPVRAQFLEDILERTGYRLTPYNQIDDYGQEKTWKMQKQAQSFKKRKSQIASAVEDALEVADFKGYSLRTKESMSCWNPDSIGFNLIEHVLCHIVKNERPGAALVFMTGWDDINSLKDKLHAHPLLGDQSRVLLLACHGSMSSSEQKLIFENPGGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQSGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSSALQPPEPLSVQNAVDYLKIIGALDENENLTVLGCKLSMLPVEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFVVPADKKDLAESAKAQIAARGYSDHLALVRAYDGWKDAEAQQAGYEFCWRNFLSSQTLRAIDSLRKQFFHLLKDIGLVGNNSETNNKWSNEEHLLRAVICAGLFPGISSVVNKEKSISLKTMEDGQVLLYANSVNGSVAKIPYPWIVFNEKIKVNTVFLRDSTGISDSMLLLFGGNISKGGLDGHLKMLGGYLEFFMKPELAKTYSTLKRELEELVHKKLADPMFDIHSHNELLSAVRLLVSEDNCDGRFVYGHQVLPQLKKETKSKSGDGAGGDNSKNQLQTFLSRAGHQLPTYKTQELRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAILWLKGDNTHSSGDIDHASVLLKKRNKKSKKKSFSDAKWS* 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3846 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 450 IPR014001 -
Mtr8g3846 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 871 IPR027417 -
Mtr8g3846 1172 Pfam Helicase associated domain (HA2) 736 810 IPR007502 GO:0004386
Mtr8g3846 1172 Pfam Helicase conserved C-terminal domain 541 672 IPR001650 -
Mtr8g3846 1172 SMART helicmild6 567 673 IPR001650 -
Mtr8g3846 1172 SUPERFAMILY dsRNA-binding domain-like 1061 1137 - -
Mtr8g3846 1172 SMART ha2_5 735 826 IPR007502 GO:0004386
Mtr8g3846 1172 Pfam Double-stranded RNA binding motif 1074 1136 IPR014720 -
Mtr8g3846 1172 CDD SF2_C_RHA 527 681 - -
Mtr8g3846 1172 CDD DEXHc_RHA-like 289 449 - -
Mtr8g3846 1172 PANTHER ATP-DEPENDENT RNA HELICASE 59 1076 - -
Mtr8g3846 1172 Gene3D - 715 818 - -
Mtr8g3846 1172 Gene3D - 228 451 IPR027417 -
Mtr8g3846 1172 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 892 974 IPR011709 -
Mtr8g3846 1172 MobiDBLite consensus disorder prediction 1153 1172 - -
Mtr8g3846 1172 Gene3D - 533 691 IPR027417 -
Mtr8g3846 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 713 IPR001650 -
Mtr8g3846 1172 SMART DRBM_3 1074 1137 IPR014720 -
Mtr8g3846 1172 MobiDBLite consensus disorder prediction 206 221 - -
Mtr8g3846 1172 SMART ultradead3 271 467 IPR014001 -
Mtr8g3846 1172 MobiDBLite consensus disorder prediction 206 233 - -
Mtr8g3846 1172 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 59 1076 - -
Mtr8g3846 1172 Pfam DEAD/DEAH box helicase 284 434 IPR011545 GO:0003676|GO:0005524
Mtr8g3846 1172 Gene3D - 1056 1141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3846 Mtr-Chr8 49133262 49145774 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3846 K14442 - gmx:100791006 1892.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3846 8 49133262 49145774 Mtr8g3846 8 49133262 49145774 ECH