Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3743 ATGTCTCGAATCTTTGAATACTTCGTTGTATGCGGAATCGGTCCAGAGATTCGATCCATCGATGGAAACAAAGGCTACCATGGCCCTGGTTGGATGTATCTTCCTTCTCTTCTCGATCAATTTCCACCTTCCACTCACTCTCTATACCCTCCTCCACCTCCTCAGCTTTCAACTTGTGTTCTTCCAGCTGGTGTTGAGTTCCATGCTTCAGGATTTGATCCCAACGATCCTTCTACGTTTCCTCGGAGTTATCCTATTGTTTTGACCGAGGGTGATGGTTCAAAAATCTACGTTAGCTGCATTTCTTTCCGGGATCATGTTTGTGAAGATGTTATAGAGGCCTACAGGATACAGGGAAATTCCTATGCTGACAAATGCATCTGTCTAGTTTCACGCTCGCCGTGTTTCAGTGTGCTAAGGAGTACCCTTGAGGAACTGTTTGTTCTATGTTTCTCCCCAACTGGAAGTAGCAAGCCGCTATGGGATATTATAGCACATACGGTGTCCAATGTACCTTTGCCTACTCCTGGAAAGGAGCGAGTTCTGTTTGCTATTGAGAATTGTCTGCTTTCTGTAGAGGCCCCACCAAACTGTGGACTTCCCCATGTTGATATATCATTCCAGCCTCTGGTACAGTGTTTAGATGTTGACAACTTAATAAATCTTTTTACGGCAGTGCTGCTTGAGAGGAGGATTTTACTTCGGGCTAACAAGTATTCACTTCTAACTCTCGCATCAGAGGCCATTTGTCACCTAATCTACCCATTCCGATGGCAGCATGTATACATTCCATTGCTGTTTTACAGTGGAGTAGATTATATTGATGCTCCTACACCATATATGATGGGACTCCATTCAGGTGTTGATACCACTGGTCTAACAATGGATGGCGTAGTTGTTGTGGACCTTGAGTATAATCGTATCACGACATCAGAGGAAATTCCACCTATTCCTGAGCCAGAATTAAGCTTTTTGCGTGGTGAGATCATGAAGTTATTACATCCCAACGTAATTGGGATTGATGAAATGAAGGCTGGTATATATAGTGCATCTGAGCATTTTCCCAAACTTAGTGCTAAGCAATGGGGAGAAGATCATGACCTTCAGCTAAGGATGATATTCCTAAAGTTCTTTGCAACATTTTTAAGTGGTTACCGCAATTTTCTGGAAAATAGTGCTACTCAGGTCTTCAACACCCAAGCTTTTCTGAAGCAGCGATCTCGATCTACCAATCAACCGTCAGAGCCCATGATAGCTCAGTTCCTTGACTCCCATGGTTTCTTGGACTACTTGGAAAGAGGGGTAGGTTTTGATGAAAACAACAATACTGTTCTTGATAAGCTACAAGATGCAATTGGAAGGGGTCAAAACCCTATGTCAGTTTTTCCTTCATCCTCGGTAGAGCCTGAGATTTTAACAGTATCAGATTCTGCTGTAGGAATATCAGAGTCTGGTGCCAAATATACTTATGATAGATTTCCTGCAAACATCAGAACCGAAGAGCAAGAAGAAAAGAGGAAGCAGATTCTTGCAACCATTAGTAATGCCTTCGAGTACTCAGGAAGACATACTCCAAGCAAGGATCCTTTAGCAGACAATCTTAGCCCACTCGAGAGAGCTGCTGAAAGGGAGCTTATGGTGCTGGACATTAAGGTTAAGCTGCAGGGTTTATGGCTGCGGCTTCTTAAATTGGGATCGACGGATGACCCTCTCTCATCCTTTGAATATGGAACAATACTTGCTTTAATTGAATCGGATGCAGAGGGAATTGGTGGTAGTGGATTTGTTGAATGTATAAGGGAGCATATGCATTCGGGTTGGGATTGTCAGCTCACCGAAGAACAATTTATTGCAGTGAAAGAGTTGCTCAAAACAGCTATCAATCGTGCATCATCACGAAGTGACTGGTTGACCATTAGAGATGCTCTTGAAGTTTCTTCTGATATGTATAAGAAAGACAATAATAATGTGCCAGACTATGTCCAACGTCATCTTATTTCTCTATCCATTTGGGAGGAGCTACGGTTTTGGGAAGGATATTTTGACTTCTTAATGGAGCAATCTTCAAACAAGTCCGCCAACTACGCATCTCTGGTGACTGCACAGCTTGTTGTGTTGGCTTCACACATGGCTGGGCTAGGACTTCCTGACAATGATGCTTGGTATATGATCGAAACAATTGCAGAGAGGAACAGTATCGGATCCAAACAATTTATAAAAATCCGAGGATTCTTGTCTCATATCCAACAACTACGCAATGGATACTGGGGATTCACCTCAACGAAGGCACAGTCTGCACTAGCACTTGCATTGCCATCCCCACATTCAAAAAATGCCAAAGATGAGGATCAGCAACCAACTGAGGGAACCGGTGTTGGTAGAAGCTGGGTGCAGAGTATGTTCAGCCGAAATACAACATCTAGATCGAGCTCATTTAGTCGTGTTCGTAGATGGACGTCTGACGGAGGCAATTCAGCCACCAATGAGAATGGGACTCCTCGCAAACAAGATTCATCAACTGGGGGGCAGAAGAAGCTTCAAACTAATGTTCGCATGCTTAGGGGTCATAACGGTGCCATTACTGCTCTCCACTGTGTTACAAAGAGAGAAGTGTGGGATTTGGTGGGTGACCGTGAAGATGCTGGTTTCTTTATTAGTGGAAGTACAGACTGCTCTGTTAAGATATGGGACCCAAGTCTTCGTGGTTCTGAACTTAGGGCTACTTTAAAAGGGCATACGAGGACTGTCCGTGCCATAAGTTCAGACAGGGGGAAGGTGGTGTCGGGATCGGATGATCAGTCTGTTTTGGTTTGGGATAAGCAGACAACTCAACTTTTAGAAGAGCTTAAAGGCCATGATGGACCGGTCAGCTGTGTACGCACACTCTCAGGTGAGCGTGTGCTAACTGCATCCCATGACGGCACTGTGAAGATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTTTATGCATGGAATATGATGACAATGTGGGAATCTTGGCTGCGGCTGGAAGAGACGTGGTTGCCAACATGTGGGACATTCGTGCTAGTAGGCAGATGCATAAACTTTCAGGACATACACAATGGATAAGGTCACTAAGAATGGTCGGTGACACTGTTATTACTGGTAGTGATGATTGGACAGCAAGAATATGGTCAGTTTCACGTGGAACATGTGATGCTGTCCTAGCATGTCATGCAGGGCCAATATTATGTGTTGAATATTCTTCGTTAGATAGAGGAATAATAACCGGGTCAACCGATGGCCTGCTGCGGTTTTGGGAAAATGACGATGGAGGTATAAGGTGTGCAAAAAATGTCACAGTTCACAATGCTGCCATATTATCTATCAATGCCGGGGAGCACTGGTTAGGTATTGGAGCAGCTGATAATTCTCTGTCTCTTTTTCATCGGCCCCAAGAGAGACTTGGTAGTTTTTCTGGCACCGGCGGGTCCAAGATGGCTGGTTGGCAGCTTTACAGAACCCCACAGAAAACAGTTGCTATGGTAAGATGCATCGCTTCAGACTTGGAGAGGAAAAGGATATGCAGTGGCGGTCGTAATGGGCTTCTAAGACTATGGGATGCAACCATCAATATTTGA 3630 0.4435 MSRIFEYFVVCGIGPEIRSIDGNKGYHGPGWMYLPSLLDQFPPSTHSLYPPPPPQLSTCVLPAGVEFHASGFDPNDPSTFPRSYPIVLTEGDGSKIYVSCISFRDHVCEDVIEAYRIQGNSYADKCICLVSRSPCFSVLRSTLEELFVLCFSPTGSSKPLWDIIAHTVSNVPLPTPGKERVLFAIENCLLSVEAPPNCGLPHVDISFQPLVQCLDVDNLINLFTAVLLERRILLRANKYSLLTLASEAICHLIYPFRWQHVYIPLLFYSGVDYIDAPTPYMMGLHSGVDTTGLTMDGVVVVDLEYNRITTSEEIPPIPEPELSFLRGEIMKLLHPNVIGIDEMKAGIYSASEHFPKLSAKQWGEDHDLQLRMIFLKFFATFLSGYRNFLENSATQVFNTQAFLKQRSRSTNQPSEPMIAQFLDSHGFLDYLERGVGFDENNNTVLDKLQDAIGRGQNPMSVFPSSSVEPEILTVSDSAVGISESGAKYTYDRFPANIRTEEQEEKRKQILATISNAFEYSGRHTPSKDPLADNLSPLERAAERELMVLDIKVKLQGLWLRLLKLGSTDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHMHSGWDCQLTEEQFIAVKELLKTAINRASSRSDWLTIRDALEVSSDMYKKDNNNVPDYVQRHLISLSIWEELRFWEGYFDFLMEQSSNKSANYASLVTAQLVVLASHMAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIQQLRNGYWGFTSTKAQSALALALPSPHSKNAKDEDQQPTEGTGVGRSWVQSMFSRNTTSRSSSFSRVRRWTSDGGNSATNENGTPRKQDSSTGGQKKLQTNVRMLRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTRTVRAISSDRGKVVSGSDDQSVLVWDKQTTQLLEELKGHDGPVSCVRTLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGILAAAGRDVVANMWDIRASRQMHKLSGHTQWIRSLRMVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTVHNAAILSINAGEHWLGIGAADNSLSLFHRPQERLGSFSGTGGSKMAGWQLYRTPQKTVAMVRCIASDLERKRICSGGRNGLLRLWDATINI* 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3743 1209 Gene3D - 1 176 - -
Mtr8g3743 1209 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1209 - -
Mtr8g3743 1209 SUPERFAMILY WD40 repeat-like 850 1107 IPR036322 GO:0005515
Mtr8g3743 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 948 IPR001680 GO:0005515
Mtr8g3743 1209 Pfam WD domain, G-beta repeat 907 939 IPR001680 GO:0005515
Mtr8g3743 1209 Pfam WD domain, G-beta repeat 944 980 IPR001680 GO:0005515
Mtr8g3743 1209 Pfam WD domain, G-beta repeat 849 897 IPR001680 GO:0005515
Mtr8g3743 1209 Pfam WD domain, G-beta repeat 1067 1103 IPR001680 GO:0005515
Mtr8g3743 1209 Pfam WD domain, G-beta repeat 1028 1062 IPR001680 GO:0005515
Mtr8g3743 1209 SMART dDENN_cls 366 434 IPR005112 -
Mtr8g3743 1209 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1209 - -
Mtr8g3743 1209 PRINTS G protein beta WD-40 repeat signature 926 940 IPR020472 -
Mtr8g3743 1209 PRINTS G protein beta WD-40 repeat signature 967 981 IPR020472 -
Mtr8g3743 1209 PRINTS G protein beta WD-40 repeat signature 1049 1063 IPR020472 -
Mtr8g3743 1209 SMART uDENN_cls 1 104 IPR005113 -
Mtr8g3743 1209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 939 - -
Mtr8g3743 1209 ProSiteProfiles Tripartite DENN domain profile. 18 442 IPR037516 -
Mtr8g3743 1209 CDD WD40 849 1145 - -
Mtr8g3743 1209 Pfam uDENN domain 35 103 IPR005113 -
Mtr8g3743 1209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 949 983 - -
Mtr8g3743 1209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1072 1104 - -
Mtr8g3743 1209 MobiDBLite consensus disorder prediction 788 844 - -
Mtr8g3743 1209 Gene3D - 1029 1209 IPR015943 GO:0005515
Mtr8g3743 1209 SMART DENN_cls 122 306 IPR001194 -
Mtr8g3743 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 949 989 IPR001680 GO:0005515
Mtr8g3743 1209 ProSitePatterns Trp-Asp (WD) repeats signature. 967 981 IPR019775 -
Mtr8g3743 1209 ProSitePatterns Trp-Asp (WD) repeats signature. 1191 1205 IPR019775 -
Mtr8g3743 1209 Gene3D - 810 1028 IPR015943 GO:0005515
Mtr8g3743 1209 MobiDBLite consensus disorder prediction 774 844 - -
Mtr8g3743 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 879 897 IPR001680 GO:0005515
Mtr8g3743 1209 SMART WD40_4 846 897 IPR001680 GO:0005515
Mtr8g3743 1209 SMART WD40_4 902 939 IPR001680 GO:0005515
Mtr8g3743 1209 SMART WD40_4 1165 1204 IPR001680 GO:0005515
Mtr8g3743 1209 SMART WD40_4 983 1022 IPR001680 GO:0005515
Mtr8g3743 1209 SMART WD40_4 1025 1062 IPR001680 GO:0005515
Mtr8g3743 1209 SMART WD40_4 942 980 IPR001680 GO:0005515
Mtr8g3743 1209 SMART WD40_4 1109 1146 IPR001680 GO:0005515
Mtr8g3743 1209 SMART WD40_4 1065 1104 IPR001680 GO:0005515
Mtr8g3743 1209 Gene3D - 202 387 IPR043153 -
Mtr8g3743 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 1072 1104 IPR001680 GO:0005515
Mtr8g3743 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 1032 1071 IPR001680 GO:0005515
Mtr8g3743 1209 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3743 Mtr-Chr8 47912106 47930501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3743 849 1116 Acyl Lipid Metabolism Gene Families AT3G18860 24.912 3.79e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3743 - - gmx:100818305 2208.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3743 8 47912106 47930501 Mtr8g3743 8 47912106 47930501 ECH