Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3580 ATGCCTGGTCTTGTATCCCCAGGTGGACCTCCGCCCCGAATCACCTTACCCGAAACCCCCACTCAAAGATCCGAATCCTCCAAAACACCAACCCAATCACCACTCCCTAACAAAAAACCACCCTCTCCCTCCCCTTCTTCACGCTCCAAGAAAAAAACATCCGAAACCCCCACCACCAACTCTCTCCTCTCCGAAGCCTCACTCGATAACCCAGATCTAGGCCCATTCCTTCTCAAAGTAGCCCGCGACACTATCGCTTCCGGCGATGGGCCCGCCAAAGCACTCGACTATGCCATCCGCGCTTCCAAATCCTTCGAACGCTGCGCCGTTGAAGGTGAACCGAGTCTCGACCTCGCTATGAGCCTCCATGTCCTCGCCGCTATTTACTGTAGCTTAAACCGTTTCGAAGAAGCTGTTCCTGTTCTCGAACGCGCGATCCATGTTCCTGATGTTGAACGTGGTGCCGATCATGCTCTTGCTGCTTTCTCCGGTTATATGCAGTTAGGTGACACTTTTTCCATGTTAGGTCAAGTTGATAAATCCATTTTAATGTATGATCAAGGACTTCAAATTCAGATCCAAACGTTAGGTGAAACCGATCCACGCGTCGGTGAAACCTGTCGCTATTTGGCGGAGGCGAATGTTCAGGCTATGCAGTTTGATAAAGCAGAGGAGCTTTGTAACAAAACCTTGGAGATTCATCGTGCACACAGTGAACCTGCTTCTCTTGAAGAAGCTGCAGATCGGAGACTTATGGCGTTGATTTGTGAGGCCAAAGGTGACTATGAATCGGCGTTGGAGCATCTTGTTCTTGCGAGTATGGCAATGATCGCTAACGGCCAAGATAATGAAGTTGCTTCCATTGATGTGAGTATTGGAAATATTTATATGTCTCTGTGTCGTTTTGATGAAGCTATATTTTCTTATCAGAAAGCACTTACAGTGTTTAAGTCGTCCAAAGGTGAAAATCATCCTTCTGTTGCATCGGTGTTTGTTCGATTAGCTGATTTGTATCATAGGACAGGGAAACTTCGTGAATCAAAATCTTATTGCGAAAATGCTCTTAGAATTTACTCGAAGCCAGTTCCTGGAACTACTGCAGAGGAGATTGCTGGTGGTTTGACTGAGGTTTCAGCGATATTTGAATCTGTTGATGATCCGGAGGAGGCGTTGAAGCTTTTGCAGAAAGCCATGAAATTGTTGGAAGATAAACCTGGACAGCAGAGTACAGTTGCGGGGATAGAAGCACGAATGGGAGTGATGTATTATATGATTGGGAAGTACGATGAGGCGAGAAGTGCTTTTGAGAGTGCTGTGTTGAAACTGAGAACTAGTGGGGAAAGAAAATCTGCTTTTTTTGGTGTTGTTTTGAATCAGATGGGATTGGCTTGTGTGCAATTGTTTAAGATAGATGAAGCTGCTGAATTGTTTGAGGAAGCTAGGGGAATTCTTGAACAAGAATGTGGACCTTGTCATCAAGATACTCTCGGTGTATATAGCAATCTTGCAGCAACTTATGATGCAATGGGAAGAGTTGGAGATGCAATTGAAATCTTAGAATATGTGCTGAAGTTGAGGGAAGAGAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGTTTAGCTGAGTTGCTGAAAGAAGCTGGCAAGACAAGAGACAGAAAAGCAAAATCTTTGGAAAATCTTATTGATCCAAATTCAAAGAGGACAAAGAAGGAGAGTAACAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1767 0.4482 MPGLVSPGGPPPRITLPETPTQRSESSKTPTQSPLPNKKPPSPSPSSRSKKKTSETPTTNSLLSEASLDNPDLGPFLLKVARDTIASGDGPAKALDYAIRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLNRFEEAVPVLERAIHVPDVERGADHALAAFSGYMQLGDTFSMLGQVDKSILMYDQGLQIQIQTLGETDPRVGETCRYLAEANVQAMQFDKAEELCNKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAIFESVDDPEEALKLLQKAMKLLEDKPGQQSTVAGIEARMGVMYYMIGKYDEARSAFESAVLKLRTSGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKESNKRWPGLGFRI* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3580 588 MobiDBLite consensus disorder prediction 18 33 - -
Mtr8g3580 588 MobiDBLite consensus disorder prediction 1 67 - -
Mtr8g3580 588 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 22 587 - -
Mtr8g3580 588 Gene3D Tetratricopeptide repeat domain 68 164 IPR011990 GO:0005515
Mtr8g3580 588 SMART tpr_5 119 152 IPR019734 GO:0005515
Mtr8g3580 588 SMART tpr_5 328 361 IPR019734 GO:0005515
Mtr8g3580 588 SMART tpr_5 454 487 IPR019734 GO:0005515
Mtr8g3580 588 SMART tpr_5 496 529 IPR019734 GO:0005515
Mtr8g3580 588 SMART tpr_5 246 279 IPR019734 GO:0005515
Mtr8g3580 588 SMART tpr_5 412 445 IPR019734 GO:0005515
Mtr8g3580 588 SMART tpr_5 162 195 IPR019734 GO:0005515
Mtr8g3580 588 SMART tpr_5 286 319 IPR019734 GO:0005515
Mtr8g3580 588 SMART tpr_5 204 237 IPR019734 GO:0005515
Mtr8g3580 588 SMART tpr_5 371 404 IPR019734 GO:0005515
Mtr8g3580 588 Gene3D Tetratricopeptide repeat domain 455 580 IPR011990 GO:0005515
Mtr8g3580 588 Gene3D Tetratricopeptide repeat domain 273 454 IPR011990 GO:0005515
Mtr8g3580 588 SUPERFAMILY TPR-like 413 554 IPR011990 GO:0005515
Mtr8g3580 588 MobiDBLite consensus disorder prediction 553 582 - -
Mtr8g3580 588 SUPERFAMILY TPR-like 165 439 IPR011990 GO:0005515
Mtr8g3580 588 Coils Coil 537 557 - -
Mtr8g3580 588 Gene3D Tetratricopeptide repeat domain 165 272 IPR011990 GO:0005515
Mtr8g3580 588 PANTHER - 22 587 - -
Mtr8g3580 588 Pfam Tetratricopeptide repeat 285 359 - -
Mtr8g3580 588 Pfam Tetratricopeptide repeat 456 528 - -
Mtr8g3580 588 MobiDBLite consensus disorder prediction 44 67 - -
Mtr8g3580 588 MobiDBLite consensus disorder prediction 1 17 - -
Mtr8g3580 588 MobiDBLite consensus disorder prediction 553 588 - -
Mtr8g3580 588 ProSiteProfiles TPR repeat profile. 286 319 IPR019734 GO:0005515
Mtr8g3580 588 Pfam MalT-like TPR region 123 272 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3580 Mtr-Chr8 46369984 46372758 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3580 - - gmx:100815100 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3580 8 46369984 46372758 Mtr8g3580 8 46369984 46372758 ECH