Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3564 ATGAGCTGTTTTTGCTTGATGAAAGGCAAACCAAAAACTAAGCAAGAACAATCCTCCATTCTTGCCTTGGAGACATCATTTACTGTGAATGAGGTTGAGGCTTTACTTGACTTGTTTAAGAAACTAAGTAGTTCAATTATTGATGATGGCTGCATTCACAAGGAGGAGTTCCAACTCGCACTTTTCAGAAATAAGAGCAAGCAGAATCTACTTGCAAGCAGGGTATTTGATATGTTTGATATTAAGCGTAACGGAGTAATTGAATTTGGAGAATTTGTTCGCTCACTAAGCATTTTTCATCCAAAGACATCTGAAGAGAAGAAAATTGAATTTGCATTTAAACTGTTTGACCTTGGGAAGACCGGATACATTGAGCATAGCGAGTTGAAGGAGATGGTCTTGGCTACTTTGACTGAATCAGAAGTTACAGTTACAGAAGATATTGTTGAATCCATTGTGGAAAAGACAATGGAGGAGGTTGACTCAAAAGGAGATGGGAAGATTGATATGGAAGAGTGGAAAGAGTATGCAGCAAAGAATCCTTCTCTTCTTAAGATCATGACTCTGCCATATCTAAAGGATATAACTATGGCCTTTCCCAGTTTTGTTTTGCACACCGAGGTGGAAGATTAG 633 0.3839 MSCFCLMKGKPKTKQEQSSILALETSFTVNEVEALLDLFKKLSSSIIDDGCIHKEEFQLALFRNKSKQNLLASRVFDMFDIKRNGVIEFGEFVRSLSIFHPKTSEEKKIEFAFKLFDLGKTGYIEHSELKEMVLATLTESEVTVTEDIVESIVEKTMEEVDSKGDGKIDMEEWKEYAAKNPSLLKIMTLPYLKDITMAFPSFVLHTEVED* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3564 210 CDD EFh 108 175 IPR002048 GO:0005509
Mtr8g3564 210 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Mtr8g3564 210 PANTHER CALCINEURIN B 1 209 IPR045198 GO:0005509|GO:0019722|GO:0019900
Mtr8g3564 210 Pfam EF-hand domain pair 106 175 IPR002048 GO:0005509
Mtr8g3564 210 SUPERFAMILY EF-hand 21 203 IPR011992 -
Mtr8g3564 210 Pfam EF hand 75 94 IPR002048 GO:0005509
Mtr8g3564 210 Gene3D - 18 210 - -
Mtr8g3564 210 PRINTS Recoverin family signature 13 27 - -
Mtr8g3564 210 PRINTS Recoverin family signature 75 96 - -
Mtr8g3564 210 PRINTS Recoverin family signature 122 140 - -
Mtr8g3564 210 PRINTS Recoverin family signature 168 188 - -
Mtr8g3564 210 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Mtr8g3564 210 SMART efh_1 152 180 IPR002048 GO:0005509
Mtr8g3564 210 SMART efh_1 108 136 IPR002048 GO:0005509
Mtr8g3564 210 SMART efh_1 71 99 IPR002048 GO:0005509
Mtr8g3564 210 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Mtr8g3564 210 PANTHER CALCINEURIN B-LIKE PROTEIN 8 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3564 Mtr-Chr8 46203426 46207122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3564 1 210 EF-hand Containing Proteins AT4G17615 55.714 3.28e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3564 K06268 - vvi:100254683 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3564 8 46203426 46207122 Mtr8g3564 8 46203426 46207122 ECH