Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3563 ATGAGAATCAAACCAACTTGTGTGGATACTGCTACACCAGCTCTATCTGGCATATGTTCTAGTCAAATCGCAAGTGCACATATATATACGGTTAATTCATCCCCAAAGTCTGGGAAACATAAGCAAGTCTTTTTGATGGGGTGTGCTTGCACCAAACCGCAATTTCGGCATGAAGATCCAGCAATTCTTGCTGAACAAACTTATTTTAATGTTTCTGAAATTGAAGCATTATATGATCTCTTCATGAAATTAAGCAGCTCAATGGTCAATGATGGGCTAATTAGCAAAGAAGAGTTTCAACTTGGCTTATTCGGAAGCAGCAAGAAACAGAATCTCTTTGGTGACAGGGTGTTCAATATATTTGACTCAAAAAATGATGGTATGATAGATTTTGGAGAGTTTGTTAAAGCTTTAAGCGTTTTCCATCCAGCAGCGCCTCAACCACAAAAGGCAGCTTTTGCATTTCGACTCTATGATATATGGCAAAGAGGCTTTATTGAAAGAGATGAGGTAAGAGAGATGATACTGGCACTCCTAAGAGAATCTGATTTGGTTCTTTCTCATGAGATGATTGAGGTCATAATTGATAAGGCATTTCAAGAAGCTGATTTAAAAAGAGATGGAATTATTGATCAAGAGGAATGGGAAAGTTTTGTTGCTCAAAATCCATCCTTATTGAGGAATATGACAATTCCATATCTGAAGTAA 708 0.3729 MRIKPTCVDTATPALSGICSSQIASAHIYTVNSSPKSGKHKQVFLMGCACTKPQFRHEDPAILAEQTYFNVSEIEALYDLFMKLSSSMVNDGLISKEEFQLGLFGSSKKQNLFGDRVFNIFDSKNDGMIDFGEFVKALSVFHPAAPQPQKAAFAFRLYDIWQRGFIERDEVREMILALLRESDLVLSHEMIEVIIDKAFQEADLKRDGIIDQEEWESFVAQNPSLLRNMTIPYLK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3563 235 ProSiteProfiles EF-hand calcium-binding domain profile. 190 225 IPR002048 GO:0005509
Mtr8g3563 235 PRINTS Recoverin family signature 55 69 - -
Mtr8g3563 235 PRINTS Recoverin family signature 117 138 - -
Mtr8g3563 235 PRINTS Recoverin family signature 164 182 - -
Mtr8g3563 235 PRINTS Recoverin family signature 210 230 - -
Mtr8g3563 235 CDD EFh 150 215 IPR002048 GO:0005509
Mtr8g3563 235 PANTHER CALCINEURIN B-LIKE PROTEIN 5 46 235 - -
Mtr8g3563 235 SUPERFAMILY EF-hand 61 233 IPR011992 -
Mtr8g3563 235 Pfam EF hand 115 135 IPR002048 GO:0005509
Mtr8g3563 235 Pfam EF hand 195 219 IPR002048 GO:0005509
Mtr8g3563 235 ProSiteProfiles EF-hand calcium-binding domain profile. 115 144 IPR002048 GO:0005509
Mtr8g3563 235 PANTHER CALCINEURIN B 46 235 IPR045198 GO:0005509|GO:0019722|GO:0019900
Mtr8g3563 235 SMART efh_1 194 222 IPR002048 GO:0005509
Mtr8g3563 235 SMART efh_1 150 178 IPR002048 GO:0005509
Mtr8g3563 235 SMART efh_1 113 141 IPR002048 GO:0005509
Mtr8g3563 235 Gene3D - 59 235 - -
Mtr8g3563 235 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3563 Mtr-Chr8 46201090 46203283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3563 67 235 EF-hand Containing Proteins AT5G24270 61.538 2.63e-76 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3563 K06268 - gmx:100808628 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3563 8 46201090 46203283 Mtr8g3563 8 46201090 46203283 ECH