Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3544 ATGGAAAAGCTAACACAGCTCGTTTCTATGCTTCCTCTGTTTTTTCTTCTACTTCCATCATTATCCTTCGCTGGTGGCCATGACTATGGTCAAGCTTTAAGCAAGAGCATTATGTTCTTTGAAGCTCAGAGATCTGGTTATCTTCCTCATAACCAAAGAGTTTCGTGGAGATCTCATTCTGGTCTTCAAGACGGTAAAGCAAGTGGAGTAGATCTAGTGGGTGGTTACTATGATGCAGGGGATAATGTGAAATTTGGGTTACCAATGGCATTTACTGTTACAATGATGTCATGGAGTATTATTGAATATGGTAAACAAATGGCTAGTAGTGGTGAACTTGGTCATGCCATGGAAGCTGTGAAATGGGGTACTGATTATTTCATCAAAGCTCATCCTCAACCTAATCTTCTCTATGGAGAGGTAGGAGATGGTAACACTGACCATAAGTGTTGGCAAAGACCGGAGGATATGACCACTGACCGTCGCGCTTATAAGGTTGATCCAAGTAATCCCGGGTCGGATCTCGCCGGAGAAACCGCCGCCGCTATGGCCGCTGCTTCCATTGTCTTCCGTCGCTCTAATCCTGCTTATTCCAGAGAACTCCTCCGTCATGCCTATGAGTTGTTTGATTTTGCGGATAAATACAGAGGCAAATATGACAGCAGCATCACAGTTGCACAGAAGTACTACAGATCCATCAGTGGCTACAATGACGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAACCAATATTACTTGGATTACCTTGGTAGAAATGGTGACTCCATGGGTGGAACTGGTTGGCAAATGACTGAATTTAGTTGGGATGTTAAGTATCCTGGTGTTCAAACTTTAGTTGCTAAGTTCCTGATGCAAGGGAAAGCTGGTGTTCATGCACCTGTGTTTGAAAAATATCTGCAGAGGTCTGAGTATTTCATGTGTTCATGCATTGGAAAGGGTACTCGTAATATTCAGAAGACACCTGGTGGCCTAATATACCGTCAGAGATGGAACAACCTGCAATTTGCCACAAGTTCCTCCTTTTTAGCCACTGTCTATTCTGACTACCTTGCTTCTTCTGGTAGAAACTTGAAATGTGCTTCTGGAAATGTTCCTTCTTCCCAGCTTCTCTCCTTTGCAAAGTCTCAGGTGGACTACATTCTTGGAGACAACCCAAGAGCTACAAGTTACATGGTTGGATATGGAAACAATTACCCTCAAAGAGTTCACCACAGAGGTTCATCCATTGTGTCAATCAAGGCTAATCCAAATTTTGTCAGCTGTAATGGAGGTTATGCTACTTGGTTTAGCAGCAAAAAGAGCAACACCAATATACTAACCGGTGCTATTGTTGGTGGACCTGATGCATATGATGACTTTGCTGATGAAAGAAAGAACTATGAACAAACAGAACCAGCAACCTACAACAATGCTCCTCTTATAGGTGTTCTTGCACGACTCAGTGGTGGTCATGGTGGCTATAACCAGCTCCTTCCAGTTGCTGAACCAGTTCGTAAGCCTGTTGTTACTAAGCAACATTCATTCACCAAACCAAAGACAATTCCTTCCCCAGCTTCATGGTCAGGCCCAATTTCCATTCAGCAGAAAATGACCAGCTCTTGGGTTGCGAATGGAAGAACTTATTATAGATACTCAACAATCGTGACTAACAAATCAACCAAGAATCTCAAGTCTCTCAATCTTTCAATATCCAAGCTTTATGGTCCAATCTGGGGACTCACAAAGTTTGGTGATTCATATACATTCCCAGCATGGATCAACTCATTGTCAGCTGGTAAAAGCCTTGAGTTTGTCTACATCCATTCTACCACTCCAGCAGATGTCTCAGTTGCGAACTACTCATTGGCCTGA 1884 0.431 MEKLTQLVSMLPLFFLLLPSLSFAGGHDYGQALSKSIMFFEAQRSGYLPHNQRVSWRSHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMASSGELGHAMEAVKWGTDYFIKAHPQPNLLYGEVGDGNTDHKCWQRPEDMTTDRRAYKVDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSRELLRHAYELFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWQMTEFSWDVKYPGVQTLVAKFLMQGKAGVHAPVFEKYLQRSEYFMCSCIGKGTRNIQKTPGGLIYRQRWNNLQFATSSSFLATVYSDYLASSGRNLKCASGNVPSSQLLSFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRGSSIVSIKANPNFVSCNGGYATWFSSKKSNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLIGVLARLSGGHGGYNQLLPVAEPVRKPVVTKQHSFTKPKTIPSPASWSGPISIQQKMTSSWVANGRTYYRYSTIVTNKSTKNLKSLNLSISKLYGPIWGLTKFGDSYTFPAWINSLSAGKSLEFVYIHSTTPADVSVANYSLA* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3544 627 Gene3D - 26 494 IPR012341 GO:0005975
Mtr8g3544 627 Pfam Carbohydrate binding domain CBM49 535 612 IPR019028 GO:0030246
Mtr8g3544 627 SMART CBM49_2 535 615 IPR019028 GO:0030246
Mtr8g3544 627 PANTHER ENDO-1,4-BETA-GLUCANASE 15 593 - -
Mtr8g3544 627 PANTHER ENDOGLUCANASE 15 593 - -
Mtr8g3544 627 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 464 482 IPR033126 -
Mtr8g3544 627 Pfam Glycosyl hydrolase family 9 29 488 IPR001701 GO:0004553|GO:0005975
Mtr8g3544 627 SUPERFAMILY Six-hairpin glycosidases 25 501 IPR008928 GO:0005975
Mtr8g3544 627 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 390 416 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3544 Mtr-Chr8 46048178 46053481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3544 26 627 Glycoside Hydrolase AT1G64390 78.073 0.0 992
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3544 K01179 - gmx:100801949 1095.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3544 8 46048178 46053481 Mtr8g3544 8 46048178 46053481 ECH