Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3505 ATGAAGTGCAGATCCGTTGCGTGCATATGGTCAGGCACACCTTTCCCTTCCGCTCACAAAGTAACCGCCGTCGCCGCTTTCACCCAACCACCGTCACCTGCCGCCTTTTACACCGCCGGATCCGATGGCTCCATCATCTGGTGGTCCCTCTCCACTTCCGCCTCCACCTCCTCCCCGCAAGTTAAAGCGGTGGGAGTGTTGTGTGGTCACGCATCACCAATCACTGATCTCGCTCTTTGCAGCCCCATCACAGCTGAAGAAAACGATCATGTTTCAAGTAAAACTAATTTTAGTGCTTTAATAAGTGCTTGTTGTGATGGTTTCTTGTGTGTGTGGAGTAAAAGCAGTGGACATTGCCGTTGTAGAAGAAAATTGCCACCTTGGGTTGGTACTCCTATGGTAATTCGAACACTTCCTTCGACACCGAGATATGTATGTATAGCTTGTTCTTTTGTGGATAATTCTGTTAATGATGAGTTAGGAGATAGAGAAAATCACCACAAAAAGTCCTCTAAATCTACTATCCTTATTGTGGATACATATTTGCTTTCCATTACACAAACTGTTTTTCATGGAAATTTATCCATTGGTCCCATTAAGTTTATGTCACTAGTCTTTTCTGATGATGACGAAAAGAGGAACTCAGTGTTTTTAGCTGATTCTTATGGGAAACAGCAGACAGTTCCGATATCAGATGAGCCTCGTGATTGTGTGGAAAGCGTGTCGAGTCCGCACAGCGATAAATTTCCATTGGAAAGTTCTTTTTCGACAGAGGGATTCAATGGTGTGGATCAAGTTATTTCAGTTTTAACCTTTGGAAATACTGTTGCTTTTATATTGAAAGATAAATGTATTTTTAGGTCATTGTCTAGTGATACCATGATTGGAGAGGTTTCTTTTGTGGACAGCCTCTTCTTTTCAAACGGACATTCCACTGAAGCTCGTGCTGTTGGTGGAGTTGTTCTTGAAAGTGATGATATGGGGAATACACCTGATACCTATGAAAGCGGCAACTTGATTCCAGCACACTTTGTTGTGTGGAATAATAGAGGTTATGCAATCATTTATGAAATGTCGTATCAGAATGATGTTTTTCAATGTGAACCCCATTCCGAGATTCCTGCTGGTCATTATCAACCTGATATAAGGTTGTCTGTTTTTTTCCTACAAGTAAATGAAAATCTTGTGTGCGTCAAATCAGTTTGCTTTCATCACGAGGAACCTTTACTATGGAGACCACATATCACAATTTGGTCGCTGCATCAATTTGAAGATAAACTCGGACAATTGTGCCGTCAATGCAGAATGATCGGTGATGGTGTATTTTCCACCAACTGGTTTGAGTCCACTCAGCTCGACGGACATGGTGATCTAGAGATTAAATCAACCTTTGGTGGTGCAAGTCCAGGTTCTGAGGACATGGACATCATAAATGAGAAGGGCATAAGTAATTATTATCCTTACAAGGGGAAGATAGTATCTTCTTCCATGATTATTGCTGAGAACCTCTTTACACCTTATGCTGTCGTATATGGATTTTTTAGTGGAGAAATAGAGGTTGTAAGATTTGATCAGTTTCAAGAGATTTTTCTGGACGATGCAAGTTCCAATCCTGATGAAAAGTCAACTGCACACAAACAGAATTTCTCGGGACATACAGGTTCTGTACTTTGTTTGGCAGTACATCAAATGATGTGTAGTGCAAAAAGCCGCACTTTTAAACGGGTTCTGGTGTCTGGCAGTATGGATTGCACAATTCGTATATGGGATCTTGACAGTGGCAGTCTTATTAAGGTAATGCATCATCATGTGGCTGCAGTGCGTCAAATTATTCTTCCCCCATCTTTGACTGGGCATCCTTGGAGCGACTGCTTTCTTTCAGTTGGAGAGGATGCATGTGTTGCCCTTGTTTCTCTTGAGACTCTGCAGGTGGAAAGAATGTTTCCTGGACACGTGAACTATCCTTCAAAAGTTTTATGGGATGGAACAAGAGGCTATATTGCCTGTCTTTGTCAAACACATTATGGAACTTCTGATGGTGATATATTATATATTTGGGACGTAAAGACAGGTTCCCGGGAGCGACTCATACGTGGGACAGCAGCGCATTCTTTGTTCGATCATTTTTGTAAAAGTATTAGTATGAATTCTATATCTGGCTCAGTGCTGAATGGAAATACGTCAGTCTCTTCATTACTTCTTCCAATAGTTGATGATGCAAGGTTATCTAACTCTCCCTTAAATCATACAGAGAACTTGCTTACTTCATCAAAGTCATCGCCAAGCATTTCAAGTATGACTGAGCTGAATTCTTCCAAACCTAATGCAGGTAAAGGAAATTCAGCAAAGCCAAGTTCATCTTATCTGTTTGGTCTTTTGAGTGACAACCTTCCTATCAAATGCACTTGTCCATTCCCTGGTATTGTGTCTCTTAGTTTTGATCTTGCATCATTGATGTTCTCTTTTCAAAAGAATGAGTCCATGGAGAGTGGTGAGGGCAAGCCAGTGAATATCAATTTGAAGCAGCAGGGTGTTCAGGAGCAAAATCCAAGCCACCATAATCCAGAAACTTCAGAGGGCCACAATTGGGTTAGCCTTTTTGAAGAATACTTACTGCGATACAGTTTGTCATTTTTACATTTGTGGAACGTAGACAGTGAGCTTGATAATTTGCTGATAAGTGATATGAAACTGAGGAGACCAGAAAATTTTATATTAGCTTCGGGTCTGCAGGGGGATAAAGGGTCATTGACATTGTCATTTCCTGGTCAGAGTGCCACTCTTGAGCTATGGAAATCATCATCTGAGTTTTCTGCAATGAGATCATTGACGATGGTATCCCTTGCCCAACGTTTGATTAGCTTGTCTCACTCAAGTTCAGCAGCCAGCAGCGCTTTAGCAGCATTCTATACCCGGAATTTCATGGAAAATTTTCCAGATATGAAGCCACCTTCGTTACAGCTTTTGGTGGCTTTTTGGCAAGATGAAAGTGAGCATGTACGTATGGCTGCACGCTCTATATTTCACTGTGCTGCCTCTCATGCTATTCCTCTACCTCTATGCAATTCAAAACCTAGTGAGTCAATTAATACAATCTCCCAAACTGGAAGTAGAGACAAACATCTGGGAGATGTGATAGTAGAAAGGATATCTCCTAAGGCAGAAAAACAAGGAATGTCCCAAGATGAGGAATCCAAGATACTGACTTGGCTAGAATCATATGAAGTGCAAGATTGGATTTCTTGTGTTGGTGGAACAAGTCAAGATGCAATGACATCTCACATTATTGTTGCTGCTGCACTGGCTATCTGGTATCCTAGTCTTGTAAAACCTAGGCTTTCCACGTTAGTTGTTCATCCATTAATGAAGTTGGCTATGTCCATGAACGAGAAGTACAGCTCCACTGCTGCTGAGCTCCTTGCAGAAGGCATGGAGAGCACGTGGAAAGAATGCATGGTCTCTGAGATTCCTCGTCTAATTGGAGATATTTTTTTCCAAGTAGAGTTGAGTGGCCCGTCTTCCAAGTCATTGACAGAAATTCCACCTGCATCTTTTTCTATTAAACAGACTTTGGTGGAGGTTCTCCTTCCAAGTTTAGCTATGGCTGATATACCAGGCTTTTTGACAGTGATCGAAAGCCAAATTTGGTCAACAGCGTCTGATTCACCTGTCCACATGGTATCCTTGTTGACTCTCATAAGGATTATGCGTGGTTCTCCAAGATATTTGGCCCAGTACCTTGACAAGGTTGTCAACTTCATTTTACAGACTATAGATCCTAGCAACTCAGTCTTGCGGAAGGCGTGCTTCCAGAGTTCCTGGACAACTTTTAAAGAAGTTGTACGTGTATATCCTATGGTTGCTGTCAATGAGTCTTGGACCAGACTAGCAGTTGGAGATGTGATTGGAGAGGTTAACAATGCAAGCATTAGGGTTTATGATATGCAAAGTGTAACAATGATAAAGGTTTTGGATGCAAGTGGACCTCCAGGACTTCCTAGTTTGCTCACCGCAACCGCTTCAGGAGCAGTGTTAACTACTGCAATCTCAGCACTAAGCTTTTCACCAGATGGAGAGGGGCTGGTTGCTTTTTCGGAACATGGGCTTATGATTAGATGGTGGTCACTGGGATCTTTCTGGTATGAGAAACTGAGCCGGAACTTTGTTCCTGTCCAGTGCACAAAATTAATATTTGTTCCTCCTTGGGAGGGATTCTCACCTAATTCATCCCGGTCAAGCATTATGGCCAGCATTTTGGATACTGAAAAGCAGCTTAATTTGCAGAATAATGCAAAGGATTCAAATCATGTGGACAGTTTGAAGCAATTGCTTCATAATCTGGACCTCTCTTATCGATTAGAATGGGTTGCGGAACGGAAAGTACTTCTTACAAGGCATGGTAATGAACTGGGCACTTTTCAGTTGTAG 4428 0.4192 MKCRSVACIWSGTPFPSAHKVTAVAAFTQPPSPAAFYTAGSDGSIIWWSLSTSASTSSPQVKAVGVLCGHASPITDLALCSPITAEENDHVSSKTNFSALISACCDGFLCVWSKSSGHCRCRRKLPPWVGTPMVIRTLPSTPRYVCIACSFVDNSVNDELGDRENHHKKSSKSTILIVDTYLLSITQTVFHGNLSIGPIKFMSLVFSDDDEKRNSVFLADSYGKQQTVPISDEPRDCVESVSSPHSDKFPLESSFSTEGFNGVDQVISVLTFGNTVAFILKDKCIFRSLSSDTMIGEVSFVDSLFFSNGHSTEARAVGGVVLESDDMGNTPDTYESGNLIPAHFVVWNNRGYAIIYEMSYQNDVFQCEPHSEIPAGHYQPDIRLSVFFLQVNENLVCVKSVCFHHEEPLLWRPHITIWSLHQFEDKLGQLCRQCRMIGDGVFSTNWFESTQLDGHGDLEIKSTFGGASPGSEDMDIINEKGISNYYPYKGKIVSSSMIIAENLFTPYAVVYGFFSGEIEVVRFDQFQEIFLDDASSNPDEKSTAHKQNFSGHTGSVLCLAVHQMMCSAKSRTFKRVLVSGSMDCTIRIWDLDSGSLIKVMHHHVAAVRQIILPPSLTGHPWSDCFLSVGEDACVALVSLETLQVERMFPGHVNYPSKVLWDGTRGYIACLCQTHYGTSDGDILYIWDVKTGSRERLIRGTAAHSLFDHFCKSISMNSISGSVLNGNTSVSSLLLPIVDDARLSNSPLNHTENLLTSSKSSPSISSMTELNSSKPNAGKGNSAKPSSSYLFGLLSDNLPIKCTCPFPGIVSLSFDLASLMFSFQKNESMESGEGKPVNINLKQQGVQEQNPSHHNPETSEGHNWVSLFEEYLLRYSLSFLHLWNVDSELDNLLISDMKLRRPENFILASGLQGDKGSLTLSFPGQSATLELWKSSSEFSAMRSLTMVSLAQRLISLSHSSSAASSALAAFYTRNFMENFPDMKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHAIPLPLCNSKPSESINTISQTGSRDKHLGDVIVERISPKAEKQGMSQDEESKILTWLESYEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPRLSTLVVHPLMKLAMSMNEKYSSTAAELLAEGMESTWKECMVSEIPRLIGDIFFQVELSGPSSKSLTEIPPASFSIKQTLVEVLLPSLAMADIPGFLTVIESQIWSTASDSPVHMVSLLTLIRIMRGSPRYLAQYLDKVVNFILQTIDPSNSVLRKACFQSSWTTFKEVVRVYPMVAVNESWTRLAVGDVIGEVNNASIRVYDMQSVTMIKVLDASGPPGLPSLLTATASGAVLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSFWYEKLSRNFVPVQCTKLIFVPPWEGFSPNSSRSSIMASILDTEKQLNLQNNAKDSNHVDSLKQLLHNLDLSYRLEWVAERKVLLTRHGNELGTFQL* 1476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3505 1475 ProSitePatterns Trp-Asp (WD) repeats signature. 577 591 IPR019775 -
Mtr8g3505 1475 Gene3D - 4 180 IPR015943 GO:0005515
Mtr8g3505 1475 SUPERFAMILY WD40 repeat-like 23 704 IPR036322 GO:0005515
Mtr8g3505 1475 Gene3D - 518 788 IPR015943 GO:0005515
Mtr8g3505 1475 MobiDBLite consensus disorder prediction 748 781 - -
Mtr8g3505 1475 SMART WD40_4 593 638 IPR001680 GO:0005515
Mtr8g3505 1475 SMART WD40_4 60 113 IPR001680 GO:0005515
Mtr8g3505 1475 SMART WD40_4 1333 1375 IPR001680 GO:0005515
Mtr8g3505 1475 SMART WD40_4 5 49 IPR001680 GO:0005515
Mtr8g3505 1475 SMART WD40_4 542 590 IPR001680 GO:0005515
Mtr8g3505 1475 SMART WD40_4 641 687 IPR001680 GO:0005515
Mtr8g3505 1475 ProSiteProfiles Trp-Asp (WD) repeats profile. 549 599 IPR001680 GO:0005515
Mtr8g3505 1475 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1475 - -
Mtr8g3505 1475 SUPERFAMILY WD40 repeat-like 1287 1379 IPR036322 GO:0005515
Mtr8g3505 1475 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1475 - -
Mtr8g3505 1475 SUPERFAMILY ARM repeat 960 1271 IPR016024 -
Mtr8g3505 1475 Pfam WD domain, G-beta repeat 547 590 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3505 K24738 - gmx:100816646 2289.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3505 8 45597367 45608460 Mtr8g3505 8 45597367 45608460 ECH